Package ubic.gemma.model.expression.bioAssayData

Class DataVectorValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<DataVector>

ubic.gemma.model.expression.bioAssayData.DataVectorValueObject

All Implemented Interfaces:

Serializable, Identifiable

Direct Known Subclasses:

BooleanVectorValueObject, DoubleVectorValueObject

public abstract class DataVectorValueObject
extends IdentifiableValueObject<DataVector>

Author:

paul

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected static ByteArrayConverter	byteArrayConverter

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	DataVectorValueObject(Long id)
protected	DataVectorValueObject(DesignElementDataVector dedv, Collection<Long> genes, BioAssayDimensionValueObject badvo)
protected	DataVectorValueObject(DesignElementDataVector dedv, BioAssayDimensionValueObject badvo)
	DataVectorValueObject(DoubleVectorValueObject dvvo)	Copy constructor

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
BioAssayDimensionValueObject	getBioAssayDimension()	Represents the order of the bioassays for this.
List<BioAssayValueObject>	getBioAssays()
CompositeSequenceValueObject	getDesignElement()
ExpressionExperimentValueObject	getExpressionExperiment()
Collection<Long>	getGenes()
QuantitationTypeValueObject	getQuantitationType()
int	hashCode()
void	setBioAssayDimension(BioAssayDimensionValueObject bioAssayDimension)
void	setDesignElement(CompositeSequenceValueObject designElement)
void	setExpressionExperiment(ExpressionExperimentValueObject expressionExperiment)
void	setGenes(Collection<Long> genes)
void	setQuantitationType(QuantitationTypeValueObject quantitationType)
String	toString()

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

byteArrayConverter

protected static final ByteArrayConverter byteArrayConverter

Constructor Detail

DataVectorValueObject

protected DataVectorValueObject(Long id)

DataVectorValueObject

protected DataVectorValueObject(DesignElementDataVector dedv,
                                BioAssayDimensionValueObject badvo)

DataVectorValueObject

protected DataVectorValueObject(DesignElementDataVector dedv,
                                Collection<Long> genes,
                                BioAssayDimensionValueObject badvo)

DataVectorValueObject

public DataVectorValueObject(DoubleVectorValueObject dvvo)

Copy constructor

Method Detail

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<DataVector>

getBioAssayDimension

public BioAssayDimensionValueObject getBioAssayDimension()

Represents the order of the bioassays for this. It might not be a real (persistent) BioAssayDimension: it might be a subset, or a "padded" one.

Returns:

BA dimension VO

setBioAssayDimension

public void setBioAssayDimension(BioAssayDimensionValueObject bioAssayDimension)

getBioAssays

public List<BioAssayValueObject> getBioAssays()

getDesignElement

public CompositeSequenceValueObject getDesignElement()

setDesignElement

public void setDesignElement(CompositeSequenceValueObject designElement)

getExpressionExperiment

public ExpressionExperimentValueObject getExpressionExperiment()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperimentValueObject expressionExperiment)

getGenes

public Collection<Long> getGenes()

Returns:

the genes

setGenes

public void setGenes(Collection<Long> genes)

Parameters:

genes - the genes to set

getQuantitationType

public QuantitationTypeValueObject getQuantitationType()

setQuantitationType

public void setQuantitationType(QuantitationTypeValueObject quantitationType)