Package ubic.gemma.model.expression.bioAssayData

Class DataVectorValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<DataVector>

ubic.gemma.model.expression.bioAssayData.DataVectorValueObject

All Implemented Interfaces:

Serializable, Identifiable

Direct Known Subclasses:

BooleanVectorValueObject, DoubleVectorValueObject

public abstract class DataVectorValueObject
extends IdentifiableValueObject<DataVector>

Base class for value objects of BulkExpressionDataVector.

Author:

paul

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	DataVectorValueObject()
protected	DataVectorValueObject(Long id)
protected	DataVectorValueObject(BulkExpressionDataVector dedv, ExpressionExperimentValueObject eevo, QuantitationTypeValueObject qtVo, BioAssayDimensionValueObject badvo, ArrayDesignValueObject advo, Collection<Long> genes)
	DataVectorValueObject(DoubleVectorValueObject dvvo)	Copy constructor

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
BioAssayDimensionValueObject	getBioAssayDimension()	Represents the order of the bioassays for this.
List<BioAssayValueObject>	getBioAssays()
CompositeSequenceValueObject	getDesignElement()
BioAssaySetValueObject	getExpressionExperiment()
Collection<Long>	getGenes()
QuantitationTypeValueObject	getQuantitationType()
int	hashCode()
void	setBioAssayDimension(BioAssayDimensionValueObject bioAssayDimension)	Represents the order of the bioassays for this.
void	setDesignElement(CompositeSequenceValueObject designElement)
void	setExpressionExperiment(BioAssaySetValueObject expressionExperiment)
void	setGenes(Collection<Long> genes)
void	setQuantitationType(QuantitationTypeValueObject quantitationType)
String	toString()

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

canEqual, getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

DataVectorValueObject

protected DataVectorValueObject()

DataVectorValueObject

protected DataVectorValueObject(Long id)

DataVectorValueObject

protected DataVectorValueObject(BulkExpressionDataVector dedv,
 ExpressionExperimentValueObject eevo,
 QuantitationTypeValueObject qtVo,
 BioAssayDimensionValueObject badvo,
 ArrayDesignValueObject advo,
 @Nullable
 Collection<Long> genes)

DataVectorValueObject

public DataVectorValueObject(DoubleVectorValueObject dvvo)

Copy constructor

Method Details

equals

public boolean equals(Object o)

Overrides:

equals in class IdentifiableValueObject<DataVector>

hashCode

public int hashCode()

Overrides:

hashCode in class IdentifiableValueObject<DataVector>

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<DataVector>

getBioAssays

public List<BioAssayValueObject> getBioAssays()

getExpressionExperiment

@Nullable
public BioAssaySetValueObject getExpressionExperiment()

getDesignElement

public CompositeSequenceValueObject getDesignElement()

getQuantitationType

public QuantitationTypeValueObject getQuantitationType()

getBioAssayDimension

public BioAssayDimensionValueObject getBioAssayDimension()

Represents the order of the bioassays for this. It might not be a real (persistent) BioAssayDimension: it might be a subset, or a "padded" one.

getGenes

@Nullable
public Collection<Long> getGenes()

setExpressionExperiment

public void setExpressionExperiment(@Nullable
 BioAssaySetValueObject expressionExperiment)

setDesignElement

public void setDesignElement(CompositeSequenceValueObject designElement)

setQuantitationType

public void setQuantitationType(QuantitationTypeValueObject quantitationType)

setBioAssayDimension

public void setBioAssayDimension(BioAssayDimensionValueObject bioAssayDimension)

Represents the order of the bioassays for this. It might not be a real (persistent) BioAssayDimension: it might be a subset, or a "padded" one.

setGenes

public void setGenes(@Nullable
 Collection<Long> genes)