Uses of Class
ubic.gemma.model.expression.designElement.CompositeSequenceValueObject
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Uses of CompositeSequenceValueObject in ubic.gemma.core.analysis.sequence
Methods in ubic.gemma.core.analysis.sequence that return CompositeSequenceValueObject Modifier and Type Method Description CompositeSequenceValueObject
GeneMappingSummary. getCompositeSequence()
Methods in ubic.gemma.core.analysis.sequence with parameters of type CompositeSequenceValueObject Modifier and Type Method Description void
GeneMappingSummary. setCompositeSequence(CompositeSequenceValueObject compositeSequence)
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Uses of CompositeSequenceValueObject in ubic.gemma.model.expression.bioAssayData
Methods in ubic.gemma.model.expression.bioAssayData that return CompositeSequenceValueObject Modifier and Type Method Description CompositeSequenceValueObject
DataVectorValueObject. getDesignElement()
Methods in ubic.gemma.model.expression.bioAssayData with parameters of type CompositeSequenceValueObject Modifier and Type Method Description void
DataVectorValueObject. setDesignElement(CompositeSequenceValueObject designElement)
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Uses of CompositeSequenceValueObject in ubic.gemma.persistence.service.expression.designElement
Methods in ubic.gemma.persistence.service.expression.designElement that return CompositeSequenceValueObject Modifier and Type Method Description protected CompositeSequenceValueObject
CompositeSequenceDaoImpl. doLoadValueObject(CompositeSequence entity)
CompositeSequenceValueObject
CompositeSequenceService. loadValueObjectWithGeneMappingSummary(CompositeSequence cs)
Include gene mapping summary in theCompositeSequenceValueObject
.CompositeSequenceValueObject
CompositeSequenceServiceImpl. loadValueObjectWithGeneMappingSummary(CompositeSequence cs)
Methods in ubic.gemma.persistence.service.expression.designElement that return types with arguments of type CompositeSequenceValueObject Modifier and Type Method Description Slice<CompositeSequenceValueObject>
CompositeSequenceService. loadValueObjectsForGene(Gene gene, int start, int limit)
Slice<CompositeSequenceValueObject>
CompositeSequenceServiceImpl. loadValueObjectsForGene(Gene gene, int start, int limit)
Methods in ubic.gemma.persistence.service.expression.designElement with parameters of type CompositeSequenceValueObject Modifier and Type Method Description Collection<GeneMappingSummary>
CompositeSequenceService. getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)
Collection<GeneMappingSummary>
CompositeSequenceServiceImpl. getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)
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Uses of CompositeSequenceValueObject in ubic.gemma.rest
Methods in ubic.gemma.rest that return types with arguments of type CompositeSequenceValueObject Modifier and Type Method Description FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject>
GeneWebService. getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit)
Retrieves the probes (composite sequences) with this gene.FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject>
PlatformsWebService. getPlatformElement(PlatformArg<?> platformArg, CompositeSequenceArrayArg probesArg, OffsetArg offset, LimitArg limit)
Retrieves composite sequences (elements) of the given platform.PaginatedResponseDataObject<CompositeSequenceValueObject>
PlatformsWebService. getPlatformElements(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)
Retrieves the composite sequences (elements) for the given platform. -
Uses of CompositeSequenceValueObject in ubic.gemma.rest.util.args
Methods in ubic.gemma.rest.util.args that return types with arguments of type CompositeSequenceValueObject Modifier and Type Method Description Slice<CompositeSequenceValueObject>
PlatformArgService. getElements(PlatformArg<?> arg, int limit, int offset)
Retrieves the Elements of the Platform that this argument represents. -
Uses of CompositeSequenceValueObject in ubic.gemma.web.controller.visualization
Methods in ubic.gemma.web.controller.visualization that return CompositeSequenceValueObject Modifier and Type Method Description CompositeSequenceValueObject
GeneExpressionProfile. getProbe()
Methods in ubic.gemma.web.controller.visualization with parameters of type CompositeSequenceValueObject Modifier and Type Method Description void
GeneExpressionProfile. setProbe(CompositeSequenceValueObject probe)
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