Uses of Class
ubic.gemma.model.expression.designElement.CompositeSequenceValueObject

Packages that use CompositeSequenceValueObject

Package	Description
ubic.gemma.model.analysis.sequence
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.visualization

Uses of CompositeSequenceValueObject in ubic.gemma.model.analysis.sequence

Methods in ubic.gemma.model.analysis.sequence that return CompositeSequenceValueObject

Modifier and Type	Method	Description
CompositeSequenceValueObject	GeneMappingSummary.getCompositeSequence()

Methods in ubic.gemma.model.analysis.sequence with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
void	GeneMappingSummary.setCompositeSequence(CompositeSequenceValueObject compositeSequence)

Uses of CompositeSequenceValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return CompositeSequenceValueObject

Modifier and Type	Method	Description
CompositeSequenceValueObject	DataVectorValueObject.getDesignElement()

Methods in ubic.gemma.model.expression.bioAssayData with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
void	DataVectorValueObject.setDesignElement(CompositeSequenceValueObject designElement)

Uses of CompositeSequenceValueObject in ubic.gemma.persistence.service.expression.designElement

Methods in ubic.gemma.persistence.service.expression.designElement that return CompositeSequenceValueObject

Modifier and Type	Method	Description
protected CompositeSequenceValueObject	CompositeSequenceDaoImpl.doLoadValueObject(CompositeSequence entity)
CompositeSequenceValueObject	CompositeSequenceService.loadValueObjectWithGeneMappingSummary(CompositeSequence cs)	Include gene mapping summary in the CompositeSequenceValueObject.
CompositeSequenceValueObject	CompositeSequenceServiceImpl.loadValueObjectWithGeneMappingSummary(CompositeSequence cs)

Methods in ubic.gemma.persistence.service.expression.designElement that return types with arguments of type CompositeSequenceValueObject

Modifier and Type	Method	Description
Slice<CompositeSequenceValueObject>	CompositeSequenceService.loadValueObjectsForGene(Gene gene, int start, int limit)
Slice<CompositeSequenceValueObject>	CompositeSequenceServiceImpl.loadValueObjectsForGene(Gene gene, int start, int limit)

Methods in ubic.gemma.persistence.service.expression.designElement with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
Collection<GeneMappingSummary>	CompositeSequenceService.getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)
Collection<GeneMappingSummary>	CompositeSequenceServiceImpl.getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)

Uses of CompositeSequenceValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type CompositeSequenceValueObject

Modifier and Type	Method	Description
PaginatedResponseDataObject<CompositeSequenceValueObject>	GeneWebService.getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit)	Retrieves the probes (composite sequences) with this gene.
FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElement(PlatformArg<?> platformArg, CompositeSequenceArrayArg probesArg, OffsetArg offset, LimitArg limit)	Retrieves composite sequences (elements) of the given platform.
PaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElements(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)	Retrieves the composite sequences (elements) for the given platform.
PaginatedResponseDataObject<CompositeSequenceValueObject>	TaxaWebService.getTaxonGeneProbes(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg)

Uses of CompositeSequenceValueObject in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return types with arguments of type CompositeSequenceValueObject

Modifier and Type	Method	Description
Slice<CompositeSequenceValueObject>	PlatformArgService.getElements(PlatformArg<?> arg, int limit, int offset)	Retrieves the Elements of the Platform that this argument represents.
Slice<CompositeSequenceValueObject>	GeneArgService.getGeneProbes(GeneArg<?> geneArg, int offset, int limit)	Obtain probes for the gene across all platforms.
Slice<CompositeSequenceValueObject>	GeneArgService.getGeneProbesInTaxon(GeneArg<?> geneArg, Taxon taxon, int offset, int limit)	Obtain probes for the gene in the given taxon across all platforms.

Uses of CompositeSequenceValueObject in ubic.gemma.web.controller.visualization

Methods in ubic.gemma.web.controller.visualization that return CompositeSequenceValueObject

Modifier and Type	Method	Description
CompositeSequenceValueObject	GeneExpressionProfile.getProbe()

Methods in ubic.gemma.web.controller.visualization with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
void	GeneExpressionProfile.setProbe(CompositeSequenceValueObject probe)