Uses of Class
ubic.gemma.model.expression.experiment.ExperimentalDesignValueObject

Packages that use ExperimentalDesignValueObject

Package	Description
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of ExperimentalDesignValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return ExperimentalDesignValueObject

Modifier and Type	Method	Description
ExperimentalDesignValueObject	DesignApplyOutcome.getDesign()

Methods in ubic.gemma.model.expression.experiment with parameters of type ExperimentalDesignValueObject

Modifier and Type	Method	Description
void	DesignApplyOutcome.setDesign(ExperimentalDesignValueObject design)

Constructors in ubic.gemma.model.expression.experiment with parameters of type ExperimentalDesignValueObject

Modifier	Constructor	Description
	DesignApplyOutcome(boolean applied, ExperimentalDesignValueObject design, DesignPreflightReport preflightAtApply)

Uses of ExperimentalDesignValueObject in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return ExperimentalDesignValueObject

Modifier and Type	Method	Description
ExperimentalDesignValueObject	ExpressionExperimentReadService.getExperimentalDesignValueObject(ExpressionExperiment ee)
ExperimentalDesignValueObject	ExpressionExperimentReadServiceImpl.getExperimentalDesignValueObject(ExpressionExperiment ee)
ExperimentalDesignValueObject	ExpressionExperimentService.getExperimentalDesignValueObject(ExpressionExperiment ee)	Build a full structured representation of an experiment's ExperimentalDesign: factors, factor values (with statements carrying stable database IDs), and per-biomaterial factor-value assignments.
ExperimentalDesignValueObject	ExpressionExperimentServiceImpl.getExperimentalDesignValueObject(ExpressionExperiment ee)
ExperimentalDesignValueObject	CurationCommitRequest.getProposedDesign()

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type ExperimentalDesignValueObject

Modifier and Type	Method	Description
DesignApplyOutcome	ExpressionExperimentService.applyDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed)	Apply proposed as the experiment's new ExperimentalDesign.
DesignApplyOutcome	ExpressionExperimentServiceImpl.applyDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed)
DesignPreflightReport	ExpressionExperimentService.previewDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed)	Predict what would happen if proposed were applied as the experiment's new design via PUT.
DesignPreflightReport	ExpressionExperimentService.previewDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed, DesignCommitPlan plan)	Predict what would happen if proposed were applied, including the bindings a DesignCommitPlan defers to a second apply pass.
DesignPreflightReport	ExpressionExperimentServiceImpl.previewDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed)
DesignPreflightReport	ExpressionExperimentServiceImpl.previewDesignChange(ExpressionExperiment ee, ExperimentalDesignValueObject proposed, DesignCommitPlan plan)
void	CurationCommitRequest.setProposedDesign(ExperimentalDesignValueObject proposedDesign)

Uses of ExperimentalDesignValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type ExperimentalDesignValueObject

Modifier and Type	Method	Description
ResponseDataObject<ExperimentalDesignValueObject>	DatasetsWebService.getDatasetDesignJson(DatasetArg<?> datasetArg)	Retrieves the structured experimental design for the given dataset as JSON.

Methods in ubic.gemma.rest with parameters of type ExperimentalDesignValueObject

Modifier and Type	Method	Description
ResponseDataObject<DesignPreflightReport>	DatasetsWebService.previewDatasetDesignChange(DatasetArg<?> datasetArg, ExperimentalDesignValueObject proposed)	Dry-run preflight for a proposed design replacement.
jakarta.ws.rs.core.Response	DatasetsWebService.replaceDatasetDesign(DatasetArg<?> datasetArg, Boolean force, Long agentProposalId, ExperimentalDesignValueObject proposed)	Apply a proposed ExperimentalDesignValueObject as the experiment's new design.

Uses of ExperimentalDesignValueObject in ubic.gemma.rest.util.args

Fields in ubic.gemma.rest.util.args declared as ExperimentalDesignValueObject

Modifier and Type	Field	Description
final ExperimentalDesignValueObject	DatasetArgService.DesignChangeResult.updated

Methods in ubic.gemma.rest.util.args that return ExperimentalDesignValueObject

Modifier and Type	Method	Description
ExperimentalDesignValueObject	DatasetArgService.getExperimentalDesign(DatasetArg<?> arg)

Methods in ubic.gemma.rest.util.args with parameters of type ExperimentalDesignValueObject

Modifier and Type	Method	Description
DatasetArgService.DesignChangeResult	DatasetArgService.applyDesignChange(DatasetArg<?> arg, ExperimentalDesignValueObject proposed, boolean force)	Validate and apply a proposed design replacement.
static DatasetArgService.DesignChangeResult	DatasetArgService.DesignChangeResult.ok(ExperimentalDesignValueObject updated)
DesignPreflightReport	DatasetArgService.previewDesignChange(DatasetArg<?> arg, ExperimentalDesignValueObject proposed)	Run a dry-run preflight for the proposed design replacement.
DesignPreflightReport	DatasetArgService.previewDesignChange(DatasetArg<?> arg, ExperimentalDesignValueObject proposed, DesignCommitPlan plan)	Run a dry-run preflight for a design commit, counting the bindings plan defers to a second apply pass.