Uses of Interface
ubic.gemma.persistence.service.genome.taxon.TaxonService

Packages that use TaxonService

Package	Description
ubic.gemma.core.loader.association.phenotype
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.genome.gene.ncbi.homology
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.propertyeditor
ubic.gemma.web.services

Uses of TaxonService in ubic.gemma.core.loader.association.phenotype

Fields in ubic.gemma.core.loader.association.phenotype declared as TaxonService

Modifier and Type	Field	Description
protected TaxonService	ExternalDatabaseEvidenceImporterAbstractCLI.taxonService	Deprecated.

Uses of TaxonService in ubic.gemma.core.loader.genome.gene.ncbi

Methods in ubic.gemma.core.loader.genome.gene.ncbi with parameters of type TaxonService

Modifier and Type	Method	Description
void	NcbiGeneLoader.setTaxonService(TaxonService bean)

Uses of TaxonService in ubic.gemma.core.loader.genome.gene.ncbi.homology

Constructors in ubic.gemma.core.loader.genome.gene.ncbi.homology with parameters of type TaxonService

Constructor	Description
HomologeneServiceImpl(GeneService geneService, TaxonService taxonService, org.springframework.core.io.Resource homologeneFile)

Uses of TaxonService in ubic.gemma.persistence.service.expression.experiment

Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type TaxonService

Constructor	Description
ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, CoexpressionAnalysisService coexpressionAnalysisService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, gemma.gsec.SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)
ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService, ExpressionExperimentService expressionExperimentService, TaxonService taxonService, gemma.gsec.SecurityService securityService)

Uses of TaxonService in ubic.gemma.persistence.service.genome.gene

Constructors in ubic.gemma.persistence.service.genome.gene with parameters of type TaxonService

Constructor	Description
GeneSearchServiceImpl(SearchService searchService, gemma.gsec.SecurityService securityService, TaxonService taxonService, GeneSetSearch geneSetSearch, GeneSetService geneSetService, GeneService geneService, GeneOntologyService geneOntologyService, GeneSetValueObjectHelper geneSetValueObjectHelper)

Uses of TaxonService in ubic.gemma.persistence.service.genome.taxon

Classes in ubic.gemma.persistence.service.genome.taxon that implement TaxonService

Modifier and Type	Class	Description
class	TaxonServiceImpl

Uses of TaxonService in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type TaxonService

Constructor	Description
TaxaWebService(TaxonService taxonService, ExpressionExperimentService expressionExperimentService, PhenotypeAssociationManagerService phenotypeAssociationManagerService, TaxonArgService taxonArgService, DatasetArgService datasetArgService, GeneArgService geneArgService)	Constructor for service autowiring

Uses of TaxonService in ubic.gemma.rest.util.args

Method parameters in ubic.gemma.rest.util.args with type arguments of type TaxonService

Modifier and Type	Method	Description
protected Map<String,List<String>>	TaxonArgService.getArgsByPropertyName(AbstractEntityArrayArg<Taxon,TaxonService> entitiesArg)
<A> Filters	TaxonArgService.getFilters(AbstractEntityArg<A,Taxon,TaxonService> entityArg)

Constructors in ubic.gemma.rest.util.args with parameters of type TaxonService

Constructor	Description
TaxonArgService(TaxonService service, ChromosomeService chromosomeService, GeneService geneService)

Uses of TaxonService in ubic.gemma.web.propertyeditor

Constructors in ubic.gemma.web.propertyeditor with parameters of type TaxonService

Constructor	Description
TaxonPropertyEditor(TaxonService taxonService)

Uses of TaxonService in ubic.gemma.web.services

Methods in ubic.gemma.web.services with parameters of type TaxonService

Modifier and Type	Method	Description
void	GoTerm2GeneEndpoint.settaxonService(TaxonService taxS)
void	DifferentialExpressionProbeResultEndpoint.setTaxonService(TaxonService taxonService)
void	ExperimentIDbyTaxonEndpoint.setTaxonService(TaxonService taxonService)
void	Gene2ProbeEndpoint.setTaxonService(TaxonService taxonService)	Sets the "business service" to delegate to.
void	GeneCoexpressionEndpoint.setTaxonService(TaxonService taxonService)	Sets the "business service" to delegate to.
void	GeneIDbyTaxonEndpoint.setTaxonService(TaxonService taxonService)
void	GeneIdEndpoint.setTaxonService(TaxonService taxonService)
void	GoTerm2GeneEndpoint.setTaxonService(TaxonService taxonService)