Uses of Interface
ubic.basecode.ontology.providers.OntologyService

Packages that use OntologyService

Package	Description
ubic.basecode.ontology.jena	Implementation of OntologyService using Apache Jena.
ubic.basecode.ontology.providers	This package contains baseCode built-in ontologies and a GenericOntologyService to implement your own ontologies.

Uses of OntologyService in ubic.basecode.ontology.jena

Classes in ubic.basecode.ontology.jena that implement OntologyService

Modifier and Type	Class	Description
class	AbstractOntologyService
class	ClasspathOntologyService	An ontology service that loads an ontology from a classpath resource.
class	TdbOntologyService	An implementation based on Jena TDB.
class	UrlOntologyService	An ontology service that loads an ontology from a URL.

Uses of OntologyService in ubic.basecode.ontology.providers

Classes in ubic.basecode.ontology.providers that implement OntologyService

Modifier and Type	Class	Description
class	AbstractBaseCodeOntologyService	Base class for all ontologies built-in to the baseCode project.
class	AbstractDelegatingOntologyService
class	CellLineOntologyService	Cell Line Ontology
class	CellTypeOntologyService	Cell Ontology
class	ChebiOntologyService	Chemical Entities of Biological Interest
class	DiseaseOntologyService	Deprecated. use MONDO instead
class	ExperimentalFactorOntologyService	Experimental Factor Ontology
class	FMAOntologyService	Deprecated. this ontology is inactive, use UBERON instead
class	GenericOntologyService	A way to create ad-hoc in-memory ontology services.
class	HumanDevelopmentOntologyService	Deprecated. this ontology was last updated in unmaintained since 2013
class	HumanPhenotypeOntologyService	Human Phenotype Ontology
class	MammalianPhenotypeOntologyService	Mammalian Phenotype Ontology
class	MedicOntologyService	Deprecated.
class	MouseDevelopmentOntologyService	Mouse Developmental Anatomy Ontology
class	NIFSTDOntologyService	Deprecated.
class	ObiService	Ontology for Biomedical Investigations
class	SequenceOntologyService	Sequence types and features ontology
class	UberonOntologyService	Uberon multi-species anatomy ontology
class	UnitsOntologyService	Units of measurement ontology

Constructors in ubic.basecode.ontology.providers with parameters of type OntologyService

Constructor	Description
AbstractDelegatingOntologyService(OntologyService delegate)