Package ubic.gemma.persistence.service.expression.bioAssayData

Class RandomBulkDataUtils

java.lang.Object

ubic.gemma.persistence.service.expression.bioAssayData.RandomBulkDataUtils

public class RandomBulkDataUtils
extends Object

Utilities for generating random bulk vectors.

See Also:

• RandomExpressionDataMatrixUtils
• RandomSingleCellDataUtils

Constructor Summary

Constructors

Constructor	Description
RandomBulkDataUtils()

Method Summary

Modifier and Type	Method	Description
static <T extends BulkExpressionDataVector> Collection<T>	randomBulkVectors(ExpressionExperiment ee, Collection<ExpressionExperimentSubSet> subsets, ArrayDesign ad, QuantitationType qt, Class<T> vectorClass)	Generate bulk vectors for a collection of subsets.
static <T extends BulkExpressionDataVector> Collection<T>	randomBulkVectors(ExpressionExperiment expressionExperiment, ArrayDesign ad, QuantitationType qt, Class<T> vectorClass)
static <T extends BulkExpressionDataVector> Collection<T>	randomBulkVectors(ExpressionExperiment ee, BioAssayDimension bad, ArrayDesign ad, QuantitationType qt, Class<T> vectorClass)
static void	setSeed(long seed)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RandomBulkDataUtils

public RandomBulkDataUtils()

Method Details

setSeed

public static void setSeed(long seed)

randomBulkVectors

public static <T extends BulkExpressionDataVector>
Collection<T> randomBulkVectors(ExpressionExperiment expressionExperiment,
 ArrayDesign ad,
 QuantitationType qt,
 Class<T> vectorClass)

randomBulkVectors

public static <T extends BulkExpressionDataVector>
Collection<T> randomBulkVectors(ExpressionExperiment ee,
 Collection<ExpressionExperimentSubSet> subsets,
 ArrayDesign ad,
 QuantitationType qt,
 Class<T> vectorClass)

Generate bulk vectors for a collection of subsets.

randomBulkVectors

public static <T extends BulkExpressionDataVector>
Collection<T> randomBulkVectors(ExpressionExperiment ee,
 BioAssayDimension bad,
 ArrayDesign ad,
 QuantitationType qt,
 Class<T> vectorClass)