Uses of Class
ubic.gemma.core.loader.util.fetcher.AbstractFetcher
Packages that use AbstractFetcher
Package
Description
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Uses of AbstractFetcher in ubic.gemma.core.loader.expression.arrayExpress
Subclasses of AbstractFetcher in ubic.gemma.core.loader.expression.arrayExpressModifier and TypeClassDescriptionclassArrayExpress stores files in an FTP site as tarred-gzipped archives.classFetch the SRDF file -
Uses of AbstractFetcher in ubic.gemma.core.loader.expression.geo.fetcher
Subclasses of AbstractFetcher in ubic.gemma.core.loader.expression.geo.fetcherModifier and TypeClassDescriptionclassRetrieve GEO GDS files from the NCBI FTP server.classclassUsed for testing, but might have other uses, to fetch GEO data from local files instead of the GEO website.classA fetcher that only looks locally for "family" files (GPLXXX_family, GSEXXX_family).classFetch GEO "GPLXXX_family.soft.gz" filesclassRetrieve and unpack the raw data files for GEO series.class -
Uses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi
Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbiModifier and TypeClassDescriptionclassClass to download files for NCBI gene. -
Uses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology
Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homologyModifier and TypeClassDescriptionclassGrabs urls like ftp:///ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data -
Uses of AbstractFetcher in ubic.gemma.core.loader.genome.taxon
Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.taxonModifier and TypeClassDescriptionclassTaxon information from NCBI comes as a tar.gz archive; only the names.dmp file is of interest. -
Uses of AbstractFetcher in ubic.gemma.core.loader.util.fetcher
Subclasses of AbstractFetcher in ubic.gemma.core.loader.util.fetcherModifier and TypeClassDescriptionclassFetcher that can fetch archives (e.g., tar.gz) and unpack them.classDownload files by FTP.classA generic class for fetching files via HTTP and writing them to a local file system.