Uses of Class
ubic.gemma.core.loader.util.fetcher.AbstractFetcher

Packages that use AbstractFetcher

Package	Description
ubic.gemma.core.loader.expression.arrayExpress
ubic.gemma.core.loader.expression.geo.fetcher
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.genome.gene.ncbi.homology
ubic.gemma.core.loader.genome.taxon
ubic.gemma.core.loader.util.fetcher

Uses of AbstractFetcher in ubic.gemma.core.loader.expression.arrayExpress

Subclasses of AbstractFetcher in ubic.gemma.core.loader.expression.arrayExpress

Modifier and Type	Class	Description
class	DataFileFetcher	ArrayExpress stores files in an FTP site as tarred-gzipped archives.
class	SDRFFetcher	Fetch the SRDF file

Uses of AbstractFetcher in ubic.gemma.core.loader.expression.geo.fetcher

Subclasses of AbstractFetcher in ubic.gemma.core.loader.expression.geo.fetcher

Modifier and Type	Class	Description
class	DatasetFetcher	Retrieve GEO GDS files from the NCBI FTP server.
class	GeoFetcher
class	LocalDatasetFetcher	Used for testing, but might have other uses, to fetch GEO data from local files instead of the GEO website.
class	LocalSeriesFetcher	A fetcher that only looks locally for "family" files (GPLXXX_family, GSEXXX_family).
class	PlatformFetcher	Fetch GEO "GPLXXX_family.soft.gz" files
class	RawDataFetcher	Retrieve and unpack the raw data files for GEO series.
class	SeriesFetcher

Uses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi

Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi

Modifier and Type	Class	Description
class	NCBIGeneFileFetcher	Class to download files for NCBI gene.

Uses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology

Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology

Modifier and Type	Class	Description
class	HomologeneFetcher	Grabs urls like ftp:///ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data

Uses of AbstractFetcher in ubic.gemma.core.loader.genome.taxon

Subclasses of AbstractFetcher in ubic.gemma.core.loader.genome.taxon

Modifier and Type	Class	Description
class	TaxonFetcher	Taxon information from NCBI comes as a tar.gz archive; only the names.dmp file is of interest.

Uses of AbstractFetcher in ubic.gemma.core.loader.util.fetcher

Subclasses of AbstractFetcher in ubic.gemma.core.loader.util.fetcher

Modifier and Type	Class	Description
class	FtpArchiveFetcher	Fetcher that can fetch archives (e.g., tar.gz) and unpack them.
class	FtpFetcher	Download files by FTP.
class	HttpFetcher	A generic class for fetching files via HTTP and writing them to a local file system.