Uses of Class
ubic.gemma.core.loader.util.fetcher.FtpFetcher
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Uses of FtpFetcher in ubic.gemma.core.loader.expression.arrayExpress
Subclasses of FtpFetcher in ubic.gemma.core.loader.expression.arrayExpress Modifier and Type Class Description class
DataFileFetcher
ArrayExpress stores files in an FTP site as tarred-gzipped archives.class
SDRFFetcher
Fetch the SRDF file -
Uses of FtpFetcher in ubic.gemma.core.loader.expression.geo.fetcher
Subclasses of FtpFetcher in ubic.gemma.core.loader.expression.geo.fetcher Modifier and Type Class Description class
DatasetFetcher
Retrieve GEO GDS files from the NCBI FTP server.class
GeoFetcher
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LocalDatasetFetcher
Used for testing, but might have other uses, to fetch GEO data from local files instead of the GEO website.class
LocalSeriesFetcher
A fetcher that only looks locally for "family" files (GPLXXX_family, GSEXXX_family).class
PlatformFetcher
Fetch GEO "GPLXXX_family.soft.gz" filesclass
RawDataFetcher
Retrieve and unpack the raw data files for GEO series.class
SeriesFetcher
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Uses of FtpFetcher in ubic.gemma.core.loader.genome.gene.ncbi
Subclasses of FtpFetcher in ubic.gemma.core.loader.genome.gene.ncbi Modifier and Type Class Description class
NCBIGeneFileFetcher
Class to download files for NCBI gene. -
Uses of FtpFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology
Subclasses of FtpFetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology Modifier and Type Class Description class
HomologeneFetcher
Grabs urls like ftp:///ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data -
Uses of FtpFetcher in ubic.gemma.core.loader.genome.taxon
Subclasses of FtpFetcher in ubic.gemma.core.loader.genome.taxon Modifier and Type Class Description class
TaxonFetcher
Taxon information from NCBI comes as a tar.gz archive; only the names.dmp file is of interest. -
Uses of FtpFetcher in ubic.gemma.core.loader.util.fetcher
Subclasses of FtpFetcher in ubic.gemma.core.loader.util.fetcher Modifier and Type Class Description class
FtpArchiveFetcher
Fetcher that can fetch archives (e.g., tar.gz) and unpack them.
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