Uses of Class
ubic.gemma.core.search.SearchContext

Packages that use SearchContext

Package	Description
ubic.gemma.core.search
ubic.gemma.core.search.source

Uses of SearchContext in ubic.gemma.core.search

Methods in ubic.gemma.core.search with parameters of type SearchContext

Modifier and Type	Method	Description
SearchService.SearchResultMap	SearchService.search(SearchSettings settings, SearchContext context)	The results are sorted in order of decreasing score, organized by class.
SearchService.SearchResultMap	SearchServiceImpl.search(SearchSettings settings, SearchContext context)
default Collection<SearchResult<ArrayDesign>>	SearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
default Collection<SearchResult<BibliographicReference>>	SearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
default Collection<SearchResult<BioSequence>>	SearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
default Collection<SearchResult<?>>	SearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated. use SearchSource.searchBioSequence(SearchSettings, SearchContext) (SearchSettings)} instead
default Collection<SearchResult<BlacklistedEntity>>	SearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
default Collection<SearchResult<CompositeSequence>>	SearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
default Collection<SearchResult<?>>	SearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Deprecated. use SearchSource.searchCompositeSequence(SearchSettings, SearchContext) instead
default Collection<SearchResult<ExpressionExperimentSet>>	SearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
default Collection<SearchResult<ExpressionExperiment>>	SearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
default Collection<SearchResult<Gene>>	SearchSource.searchGene(SearchSettings settings, SearchContext context)
default Collection<SearchResult<GeneSet>>	SearchSource.searchGeneSet(SearchSettings settings, SearchContext context)

Uses of SearchContext in ubic.gemma.core.search.source

Methods in ubic.gemma.core.search.source with parameters of type SearchContext

Modifier and Type	Method	Description
Collection<SearchResult<ArrayDesign>>	CompositeSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
Collection<SearchResult<ArrayDesign>>	DatabaseSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)	A general search for array designs.
Collection<SearchResult<ArrayDesign>>	HibernateSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
Collection<SearchResult<BibliographicReference>>	CompositeSearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
Collection<SearchResult<BibliographicReference>>	HibernateSearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
Collection<SearchResult<BioSequence>>	CompositeSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<BioSequence>>	DatabaseSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)	A database search for biosequences.
Collection<SearchResult<BioSequence>>	HibernateSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<?>>	CompositeSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated.
Collection<SearchResult<?>>	DatabaseSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)
Collection<SearchResult<BlacklistedEntity>>	CompositeSearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
Collection<SearchResult<BlacklistedEntity>>	DatabaseSearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	CompositeSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	DatabaseSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	HibernateSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<?>>	CompositeSearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Deprecated.
Collection<SearchResult<?>>	DatabaseSearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Search the DB for composite sequences and the genes that are matched to them.
Collection<SearchResult<ExpressionExperimentSet>>	CompositeSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperimentSet>>	DatabaseSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperimentSet>>	HibernateSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	CompositeSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	DatabaseSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)	Does search on exact string by: id, name and short name.
Collection<SearchResult<ExpressionExperiment>>	HibernateSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	OntologySearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)	Search via characteristics i.e. ontology terms.
Collection<SearchResult<Gene>>	CompositeSearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<Gene>>	DatabaseSearchSource.searchGene(SearchSettings settings, SearchContext context)	Search the DB for genes that exactly match the given search string searches geneProducts, gene and bioSequence tables
Collection<SearchResult<Gene>>	GeneOntologySearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<Gene>>	HibernateSearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	CompositeSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	DatabaseSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	HibernateSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)