Uses of Package
ubic.gemma.core.util

Packages that use ubic.gemma.core.util

Package	Description
ubic.gemma.cli.authentication
ubic.gemma.cli.config
ubic.gemma.cli.util
ubic.gemma.core.analysis.service
ubic.gemma.core.datastructure.matrix.io	This package contains I/O utilities for reading and writing expression data matrices.
ubic.gemma.core.loader.entrez
ubic.gemma.core.loader.expression.arrayExpress.util
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.core.loader.expression.geo.fetcher2	Provides classes for fetching data from various sources.
ubic.gemma.core.loader.expression.geo.singleCell	This package contains specific logic for dealing with single-cell data from GEO.
ubic.gemma.core.loader.expression.geo.util
ubic.gemma.core.loader.expression.sra
ubic.gemma.core.loader.expression.ucsc.cellbrowser	This package contains utilities for loading and interacting with the UCSC Cell Browser.
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.util.fetcher
ubic.gemma.core.loader.util.fetcher2	Provides classes for fetching data from various sources.
ubic.gemma.core.logging.log4j
ubic.gemma.core.ontology
ubic.gemma.core.util
ubic.gemma.core.visualization
ubic.gemma.rest
ubic.gemma.rest.providers
ubic.gemma.rest.security
ubic.gemma.rest.util
ubic.gemma.web.taglib.expression.experiment

Classes in ubic.gemma.core.util used by ubic.gemma.cli.authentication

Class	Description
GemmaRestApiClient	A minimalist client for accessing Gemma's RESTful API.

Classes in ubic.gemma.core.util used by ubic.gemma.cli.config

Class	Description
GemmaRestApiClient	A minimalist client for accessing Gemma's RESTful API.

Classes in ubic.gemma.core.util used by ubic.gemma.cli.util

Class	Description
AbstractProgressReporter
ProgressReporter	Report progress.
ProgressReporterFactory

Classes in ubic.gemma.core.util used by ubic.gemma.core.analysis.service

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.core.datastructure.matrix.io

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.entrez

Class	Description
SimpleRetryCallable	An interface for work that can be retried.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.arrayExpress.util

Class	Description
NetDatasourceUtil	Helper methods to get FTP connection.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.cellxgene

Class	Description
ProgressReporterFactory
SimpleRetryPolicy

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.geo.fetcher2

Class	Description
SimpleRetryPolicy

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.geo.singleCell

Class	Description
ProgressReporterFactory
SimpleRetryCallable	An interface for work that can be retried.
SimpleRetryPolicy

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.geo.util

Class	Description
NetDatasourceUtil	Helper methods to get FTP connection.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.sra

Class	Description
SimpleRetryPolicy

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.expression.ucsc.cellbrowser

Class	Description
ProgressReporter	Report progress.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.genome.gene.ncbi

Class	Description
NetDatasourceUtil	Helper methods to get FTP connection.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.util.fetcher

Class	Description
NetDatasourceUtil	Helper methods to get FTP connection.

Classes in ubic.gemma.core.util used by ubic.gemma.core.loader.util.fetcher2

Class	Description
ProgressReporterFactory
SimpleDownloader	A simple downloader for FTP and HTTP(s) URLs.

Classes in ubic.gemma.core.util used by ubic.gemma.core.logging.log4j

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.core.ontology

Class	Description
TextResourceToSetOfLinesFactoryBean	Converts a text resource into a set of lines.

Classes in ubic.gemma.core.util used by ubic.gemma.core.util

Class	Description
AbstractProgressReporter
BuildInfo
GemmaRestApiClient	A minimalist client for accessing Gemma's RESTful API.
GemmaRestApiClient.ErrorResponse.Error
GemmaRestApiClient.Response	A response from the API, which is either a GemmaRestApiClient.DataResponse or GemmaRestApiClient.ErrorResponse.
ProgressReporter	Report progress.
ProgressReporterFactory
SimpleDownloader.URLAndDestination
SimpleRetryCallable	An interface for work that can be retried.
SimpleRetryContext	Holds the state of a retry attempt.
SimpleRetryPolicy

Classes in ubic.gemma.core.util used by ubic.gemma.core.visualization

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.rest

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.rest.providers

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.rest.security

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.rest.util

Class	Description
BuildInfo

Classes in ubic.gemma.core.util used by ubic.gemma.web.taglib.expression.experiment

Class	Description
BuildInfo