Uses of Class
ubic.gemma.model.analysis.expression.pca.PrincipalComponentAnalysis

Packages that use PrincipalComponentAnalysis

Package	Description
ubic.gemma.core.analysis.preprocess.svd
ubic.gemma.model.analysis.expression.pca
ubic.gemma.persistence.service.analysis.expression.pca

Uses of PrincipalComponentAnalysis in ubic.gemma.core.analysis.preprocess.svd

Methods in ubic.gemma.core.analysis.preprocess.svd with parameters of type PrincipalComponentAnalysis

Modifier and Type	Method	Description
SVDValueObject	SVDServiceHelper.svdFactorAnalysis(PrincipalComponentAnalysis pca)	Compare ExperimentalFactors and BioAssay.processingDates to the PCs.
SVDValueObject	SVDServiceHelperImpl.svdFactorAnalysis(PrincipalComponentAnalysis pca)

Constructors in ubic.gemma.core.analysis.preprocess.svd with parameters of type PrincipalComponentAnalysis

Constructor	Description
SVDValueObject(PrincipalComponentAnalysis pca)

Uses of PrincipalComponentAnalysis in ubic.gemma.model.analysis.expression.pca

Methods in ubic.gemma.model.analysis.expression.pca that return PrincipalComponentAnalysis

Modifier and Type	Method	Description
static PrincipalComponentAnalysis	PrincipalComponentAnalysis.Factory.newInstance()

Uses of PrincipalComponentAnalysis in ubic.gemma.persistence.service.analysis.expression.pca

Methods in ubic.gemma.persistence.service.analysis.expression.pca that return PrincipalComponentAnalysis

Modifier and Type	Method	Description
PrincipalComponentAnalysis	PrincipalComponentAnalysisService.create(ExpressionExperiment ee, DoubleMatrix<CompositeSequence,Integer> u, double[] eigenvalues, DoubleMatrix<Integer,BioMaterial> v, BioAssayDimension bad, int numComponentsToStore, int numLoadingsToStore)
PrincipalComponentAnalysis	PrincipalComponentAnalysisServiceImpl.create(ExpressionExperiment ee, DoubleMatrix<CompositeSequence,Integer> u, double[] eigenvalues, DoubleMatrix<Integer,BioMaterial> v, BioAssayDimension bad, int numComponentsToStore, int numLoadingsToStore)
PrincipalComponentAnalysis	PrincipalComponentAnalysisService.loadForExperiment(ExpressionExperiment ee)
PrincipalComponentAnalysis	PrincipalComponentAnalysisServiceImpl.loadForExperiment(ExpressionExperiment ee)

Methods in ubic.gemma.persistence.service.analysis.expression.pca that return types with arguments of type PrincipalComponentAnalysis

Modifier and Type	Method	Description
Collection<PrincipalComponentAnalysis>	PrincipalComponentAnalysisDao.findByExperiment(ExpressionExperiment ee)
Collection<PrincipalComponentAnalysis>	PrincipalComponentAnalysisDaoImpl.findByExperiment(ExpressionExperiment ee)