Uses of Package
ubic.gemma.persistence.service
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Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledDao.FilterablePropertyMeta Meta-information for a filterable property.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.analysis Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceBaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.analysis.expression Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.analysis.expression.coexpression Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.analysis.expression.diff Class Description AbstractCriteriaFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateCriteria
API.AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.analysis.expression.pca Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.association Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.association.coexpression Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceBaseDao Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.association.phenotype Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceBaseDao Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.association.phenotype.service Class Description AbstractService Base for all services handling DAO access.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.blacklist Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.auditAndSecurity Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledService Created by tesarst on 01/06/17.FilteringService Interface for filtering-capable services.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.auditAndSecurity.curation Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledDao.FilterablePropertyMeta Meta-information for a filterable property.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.description Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractNoopFilteringVoEnabledDao Base class to use to pretend to offer filtering, but actually supporting no filterable properties.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.BrowsingDao Support for paging through the data.FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.measurement Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceBaseDao Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.protocol Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.common.quantitationtype Class Description AbstractCriteriaFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateCriteria
API.AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.arrayDesign Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledDao.FilterablePropertyMeta Meta-information for a filterable property.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.bioAssay Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractNoopFilteringVoEnabledDao Base class to use to pretend to offer filtering, but actually supporting no filterable properties.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.bioAssayData Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.biomaterial Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.designElement Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.expression.experiment Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledDao.FilterablePropertyMeta Meta-information for a filterable property.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractNoopFilteringVoEnabledDao Base class to use to pretend to offer filtering, but actually supporting no filterable properties.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.BrowsingDao Support for paging through the data.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.genome Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.genome.biosequence Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.genome.gene Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.FilteringService Interface for filtering-capable services.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.genome.sequenceAnalysis Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.AbstractVoEnabledService Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.service.genome.taxon Class Description AbstractDao AbstractDao can find the generic type at runtime and simplify the code implementation of the BaseDao interfaceAbstractFilteringVoEnabledDao Base implementation forFilteringVoEnabledDao
.AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer Configurer for filterable properties and their aliases.AbstractFilteringVoEnabledService Base implementation forFilteringVoEnabledService
.AbstractQueryFilteringVoEnabledDao Partial implementation ofFilteringVoEnabledDao
based on the HibernateQuery
API.AbstractService Base for all services handling DAO access.AbstractVoEnabledDao Created by tesarst on 01/06/17.BaseDao Interface that supports basic CRUD operations.BaseImmutableService Base service class for an immutable entity.BaseReadOnlyService Interface for read-only services.BaseService Interface that supports basic CRUD operations.BaseVoEnabledDao Created by tesarst on 01/06/17.BaseVoEnabledService Created by tesarst on 01/06/17.CachedFilteringDao CachedFilteringVoEnabledDao FilteringDao Interface for filtering-capable DAO.FilteringService Interface for filtering-capable services.FilteringVoEnabledDao Interface for VO-enabled DAO with filtering capabilities.FilteringVoEnabledService Interface VO-enabled service with filtering capabilities. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.persistence.util Class Description BaseReadOnlyService Interface for read-only services.BaseVoEnabledService Created by tesarst on 01/06/17. -
Classes in ubic.gemma.persistence.service used by ubic.gemma.rest.util.args Class Description FilteringService Interface for filtering-capable services.