Uses of Class
ubic.gemma.persistence.service.AbstractDao

Packages that use AbstractDao

Package	Description
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.analysis.expression.coexpression
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.association
ubic.gemma.persistence.service.association.coexpression
ubic.gemma.persistence.service.association.phenotype
ubic.gemma.persistence.service.blacklist	Service for managing blacklisted entities.
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.common.measurement
ubic.gemma.persistence.service.common.protocol
ubic.gemma.persistence.service.common.quantitationtype
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis
ubic.gemma.persistence.service.genome.taxon

Uses of AbstractDao in ubic.gemma.persistence.service

Subclasses of AbstractDao in ubic.gemma.persistence.service

Modifier and Type	Class	Description
class	AbstractCriteriaFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Partial implementation of FilteringVoEnabledDao based on the Hibernate Criteria API.
class	AbstractFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base implementation for FilteringVoEnabledDao.
class	AbstractNoopFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base class to use to pretend to offer filtering, but actually supporting no filterable properties.
class	AbstractQueryFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Partial implementation of FilteringVoEnabledDao based on the Hibernate Query API.
class	AbstractVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.

Uses of AbstractDao in ubic.gemma.persistence.service.analysis

Subclasses of AbstractDao in ubic.gemma.persistence.service.analysis

Modifier and Type	Class	Description
class	SingleExperimentAnalysisDaoBase<T extends SingleExperimentAnalysis>	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type SingleExperimentAnalysis.

Uses of AbstractDao in ubic.gemma.persistence.service.analysis.expression

Subclasses of AbstractDao in ubic.gemma.persistence.service.analysis.expression

Modifier and Type	Class	Description
class	ExpressionExperimentSetDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.coexpression

Subclasses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.coexpression

Modifier and Type	Class	Description
class	CoexpressionAnalysisDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis.

Uses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.diff

Subclasses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Class	Description
class	DifferentialExpressionResultDaoImpl	This is a key class for queries to retrieve differential expression results (as well as standard CRUD aspects of working with DifferentialExpressionResults).
class	ExpressionAnalysisResultSetDaoImpl
class	GeneDiffExMetaAnalysisDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.pca

Subclasses of AbstractDao in ubic.gemma.persistence.service.analysis.expression.pca

Modifier and Type	Class	Description
class	PrincipalComponentAnalysisDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.association

Subclasses of AbstractDao in ubic.gemma.persistence.service.association

Modifier and Type	Class	Description
class	Gene2GOAssociationDaoImpl
class	ReferenceAssociationDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ReferenceAssociation.

Uses of AbstractDao in ubic.gemma.persistence.service.association.coexpression

Subclasses of AbstractDao in ubic.gemma.persistence.service.association.coexpression

Modifier and Type	Class	Description
class	CoexpressionNodeDegreeDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.association.phenotype

Subclasses of AbstractDao in ubic.gemma.persistence.service.association.phenotype

Modifier and Type	Class	Description
class	DifferentialExpressionEvidenceDaoImpl
class	ExperimentalEvidenceDaoImpl
class	GenericEvidenceDaoImpl
class	GenericExperimentDaoImpl
class	LiteratureEvidenceDaoImpl
class	PhenotypeAssociationDaoImpl	deals with all basic queries used by Neurocarta

Uses of AbstractDao in ubic.gemma.persistence.service.blacklist

Subclasses of AbstractDao in ubic.gemma.persistence.service.blacklist

Modifier and Type	Class	Description
class	BlacklistedEntityDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.common.auditAndSecurity

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Class	Description
class	AuditEventDaoImpl
class	AuditTrailDaoImpl
class	ContactDaoImpl
class	PersonDaoImpl	Deprecated. as Person is deprecated
class	UserDaoImpl	DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.common.auditAndSecurity.User.
class	UserGroupDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Modifier and Type	Class	Description
class	AbstractCuratableDao<C extends Curatable,VO extends AbstractCuratableValueObject<C>>	Created by tesarst on 07/03/17.

Uses of AbstractDao in ubic.gemma.persistence.service.common.description

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.description

Modifier and Type	Class	Description
class	BibliographicReferenceDaoImpl
class	CharacteristicDaoImpl
class	DatabaseEntryDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type DatabaseEntry.
class	ExternalDatabaseDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.common.measurement

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.measurement

Modifier and Type	Class	Description
class	UnitDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.common.measurement.Unit.

Uses of AbstractDao in ubic.gemma.persistence.service.common.protocol

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.protocol

Modifier and Type	Class	Description
class	ProtocolDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type Protocol.

Uses of AbstractDao in ubic.gemma.persistence.service.common.quantitationtype

Subclasses of AbstractDao in ubic.gemma.persistence.service.common.quantitationtype

Modifier and Type	Class	Description
class	QuantitationTypeDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type QuantitationType.

Uses of AbstractDao in ubic.gemma.persistence.service.expression.arrayDesign

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.arrayDesign

Modifier and Type	Class	Description
class	ArrayDesignDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.expression.bioAssay

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.bioAssay

Modifier and Type	Class	Description
class	BioAssayDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.expression.bioAssayData

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.bioAssayData

Modifier and Type	Class	Description
class	AbstractDesignElementDataVectorDao<T extends DesignElementDataVector>
class	BioAssayDimensionDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.bioAssayData.BioAssayDimension.
class	ProcessedExpressionDataVectorDaoImpl
class	RawAndProcessedExpressionDataVectorDaoImpl
class	RawExpressionDataVectorDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.expression.biomaterial

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.biomaterial

Modifier and Type	Class	Description
class	BioMaterialDaoImpl
class	CompoundDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.biomaterial.Compound.

Uses of AbstractDao in ubic.gemma.persistence.service.expression.designElement

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.designElement

Modifier and Type	Class	Description
class	CompositeSequenceDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.expression.experiment

Subclasses of AbstractDao in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Class	Description
class	ExperimentalDesignDaoImpl
class	ExperimentalFactorDaoImpl
class	ExpressionExperimentDaoImpl
class	ExpressionExperimentSubSetDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.experiment.ExpressionExperimentSubSet.
class	FactorValueDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.experiment.FactorValue.
class	GeeqDaoImpl
class	StatementDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.genome

Subclasses of AbstractDao in ubic.gemma.persistence.service.genome

Modifier and Type	Class	Description
class	ChromosomeDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.Chromosome.
class	GeneDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type Gene.

Uses of AbstractDao in ubic.gemma.persistence.service.genome.biosequence

Subclasses of AbstractDao in ubic.gemma.persistence.service.genome.biosequence

Modifier and Type	Class	Description
class	BioSequenceDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.genome.gene

Subclasses of AbstractDao in ubic.gemma.persistence.service.genome.gene

Modifier and Type	Class	Description
class	GeneAliasDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.gene.GeneAlias.
class	GeneProductDaoImpl
class	GeneSetDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.gene.GeneSet.
class	GeneSetMemberDaoImpl

Uses of AbstractDao in ubic.gemma.persistence.service.genome.sequenceAnalysis

Subclasses of AbstractDao in ubic.gemma.persistence.service.genome.sequenceAnalysis

Modifier and Type	Class	Description
class	AnnotationAssociationDaoImpl
class	BlatAssociationDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type BlatAssociation.
class	BlatResultDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.sequenceAnalysis.BlatResult.

Uses of AbstractDao in ubic.gemma.persistence.service.genome.taxon

Subclasses of AbstractDao in ubic.gemma.persistence.service.genome.taxon

Modifier and Type	Class	Description
class	TaxonDaoImpl