Uses of Interface
ubic.gemma.persistence.service.BaseReadOnlyService

Packages that use BaseReadOnlyService

Package	Description
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis
ubic.gemma.persistence.service.analysis.expression.coexpression
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.association
ubic.gemma.persistence.service.association.phenotype.service
ubic.gemma.persistence.service.blacklist	Service for managing blacklisted entities.
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.common.protocol
ubic.gemma.persistence.service.common.quantitationtype
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util

Uses of BaseReadOnlyService in ubic.gemma.persistence.service

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service

Modifier and Type	Interface	Description
interface	BaseImmutableService<O extends Identifiable>	Base service class for an immutable entity.
interface	BaseService<O extends Identifiable>	Interface that supports basic CRUD operations.
interface	BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.
interface	FilteringService<O extends Identifiable>	Interface for filtering-capable services.
interface	FilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Interface VO-enabled service with filtering capabilities.

Classes in ubic.gemma.persistence.service that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	AbstractFilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base implementation for FilteringVoEnabledService.
class	AbstractService<O extends Identifiable>	Base for all services handling DAO access.
class	AbstractVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.analysis

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.analysis

Modifier and Type	Interface	Description
interface	AnalysisResultSetService<K extends AnalysisResult,O extends AnalysisResultSet<K>>	Interface for services providing AnalysisResultSet.
interface	AnalysisService<T extends Analysis>	Provides basic services for dealing with analyses
interface	SingleExperimentAnalysisService<T extends SingleExperimentAnalysis>	Interface for analysis service manipulating single experiments.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.coexpression

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.coexpression

Modifier and Type	Interface	Description
interface	CoexpressionAnalysisService	Deals with the Analysis objects for Coexpression - not the coexpression results themselves.

Classes in ubic.gemma.persistence.service.analysis.expression.coexpression that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	CoexpressionAnalysisServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.diff

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Interface	Description
interface	DifferentialExpressionAnalysisService
interface	DifferentialExpressionResultService	Main entry point to retrieve differential expression data.
interface	ExpressionAnalysisResultSetService
interface	GeneDiffExMetaAnalysisService

Classes in ubic.gemma.persistence.service.analysis.expression.diff that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	DifferentialExpressionAnalysisServiceImpl
class	DifferentialExpressionResultServiceImpl
class	ExpressionAnalysisResultSetServiceImpl
class	GeneDiffExMetaAnalysisServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.pca

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.analysis.expression.pca

Modifier and Type	Interface	Description
interface	PrincipalComponentAnalysisService

Classes in ubic.gemma.persistence.service.analysis.expression.pca that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	PrincipalComponentAnalysisServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.association

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.association

Modifier and Type	Interface	Description
interface	Gene2GOAssociationService

Classes in ubic.gemma.persistence.service.association that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	Gene2GOAssociationServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.association.phenotype.service

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.association.phenotype.service

Modifier and Type	Interface	Description
interface	PhenotypeAssociationService

Classes in ubic.gemma.persistence.service.association.phenotype.service that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	PhenotypeAssociationServiceImpl	Service responsible for low level operations, used by PhenotypeAssociationManagerServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.blacklist

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.blacklist

Modifier and Type	Interface	Description
interface	BlacklistedEntityService

Classes in ubic.gemma.persistence.service.blacklist that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BlacklistedEntityServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.common.auditAndSecurity

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Interface	Description
interface	AuditTrailService	Create and manipulate audit trails.
interface	ContactService
interface	SecurableBaseImmutableService<C extends Securable>
interface	SecurableBaseReadOnlyService<C extends Securable>
interface	SecurableBaseService<C extends Securable>	A base service for securable entities.
interface	SecurableBaseVoEnabledService<C extends Securable,VO extends IdentifiableValueObject<C>>
interface	SecurableFilteringVoEnabledService<C extends Securable,VO extends IdentifiableValueObject<C>>	A base service for securable entities with filtering and VO capabilities.

Classes in ubic.gemma.persistence.service.common.auditAndSecurity that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	AuditTrailServiceImpl
class	ContactServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.common.description

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.common.description

Modifier and Type	Interface	Description
interface	BibliographicReferenceService
interface	CharacteristicService
interface	DatabaseEntryService
interface	ExternalDatabaseService

Classes in ubic.gemma.persistence.service.common.description that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BibliographicReferenceServiceImpl	Implementation of BibliographicReferenceService.
class	CharacteristicServiceImpl
class	DatabaseEntryServiceImpl	Spring Service base class for DatabaseEntryService, provides access to all services and entities referenced by this service.
class	ExternalDatabaseServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.common.protocol

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.common.protocol

Modifier and Type	Interface	Description
interface	ProtocolService

Classes in ubic.gemma.persistence.service.common.protocol that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	ProtocolServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.common.quantitationtype

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.common.quantitationtype

Modifier and Type	Interface	Description
interface	QuantitationTypeService

Classes in ubic.gemma.persistence.service.common.quantitationtype that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	QuantitationTypeServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.arrayDesign

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.arrayDesign

Modifier and Type	Interface	Description
interface	ArrayDesignService

Classes in ubic.gemma.persistence.service.expression.arrayDesign that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	ArrayDesignServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.bioAssay

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.bioAssay

Modifier and Type	Interface	Description
interface	BioAssayService

Classes in ubic.gemma.persistence.service.expression.bioAssay that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BioAssayServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.bioAssayData

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.bioAssayData

Modifier and Type	Interface	Description
interface	BioAssayDimensionService
(package private) interface	ubic.gemma.persistence.service.expression.bioAssayData.DesignElementDataVectorService<T extends DesignElementDataVector>
interface	ProcessedExpressionDataVectorService
interface	RawAndProcessedExpressionDataVectorService
interface	RawExpressionDataVectorService

Classes in ubic.gemma.persistence.service.expression.bioAssayData that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	AbstractDesignElementDataVectorService<T extends DesignElementDataVector>
class	BioAssayDimensionServiceImpl	Spring Service base class for BioAssayDimensionService, provides access to all services and entities referenced by this service.
class	ProcessedExpressionDataVectorServiceImpl
class	RawAndProcessedExpressionDataVectorServiceImpl
class	RawExpressionDataVectorServiceImpl	Provides methods that can be applied to both RawExpressionDataVector and ProcessedExpressionDataVector

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.biomaterial

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.biomaterial

Modifier and Type	Interface	Description
interface	BioMaterialService
interface	CompoundService

Classes in ubic.gemma.persistence.service.expression.biomaterial that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BioMaterialServiceImpl
class	CompoundServiceImpl	Spring Service base class for CompoundService, provides access to all services and entities referenced by this service.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.designElement

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.designElement

Modifier and Type	Interface	Description
interface	CompositeSequenceService

Classes in ubic.gemma.persistence.service.expression.designElement that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	CompositeSequenceServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.expression.experiment

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Interface	Description
interface	BioAssaySetService	Generic service for dealing with all subclasses of BioAssaySet.
interface	ExperimentalDesignService
interface	ExperimentalFactorService
interface	ExpressionExperimentService
interface	ExpressionExperimentSetService
interface	ExpressionExperimentSubSetService
interface	FactorValueService
interface	GeeqService

Classes in ubic.gemma.persistence.service.expression.experiment that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BioAssaySetServiceImpl
class	ExperimentalDesignServiceImpl	Spring Service base class for ubic.gemma.model.expression.experiment.ExperimentalDesignService, provides access to all services and entities referenced by this service.
class	ExperimentalFactorServiceImpl
class	ExpressionExperimentServiceImpl
class	ExpressionExperimentSetServiceImpl	Spring Service base class for ubic.gemma.model.analysis.expression.ExpressionExperimentSetService, provides access to all services and entities referenced by this service.
class	ExpressionExperimentSubSetServiceImpl
class	FactorValueServiceImpl	Spring Service base class for FactorValueService, provides access to all services and entities referenced by this service.
class	GeeqServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.genome

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.genome

Modifier and Type	Interface	Description
interface	ChromosomeService

Classes in ubic.gemma.persistence.service.genome that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	ChromosomeServiceImpl	Spring Service base class for ChromosomeService, provides access to all services and entities referenced by this service.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.genome.biosequence

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.genome.biosequence

Modifier and Type	Interface	Description
interface	BioSequenceService

Classes in ubic.gemma.persistence.service.genome.biosequence that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	BioSequenceServiceImpl	Spring Service base class for BioSequenceService, provides access to all services and entities referenced by this service.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.genome.gene

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.genome.gene

Modifier and Type	Interface	Description
interface	GeneProductService
interface	GeneService
interface	GeneSetService	Service for managing gene sets

Classes in ubic.gemma.persistence.service.genome.gene that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	GeneProductServiceImpl
class	GeneServiceImpl
class	GeneSetServiceImpl	Service for managing gene sets

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.genome.sequenceAnalysis

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.genome.sequenceAnalysis

Modifier and Type	Interface	Description
interface	AnnotationAssociationService
interface	BlatAssociationService
interface	BlatResultService

Classes in ubic.gemma.persistence.service.genome.sequenceAnalysis that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	AnnotationAssociationServiceImpl
class	BlatAssociationServiceImpl	Spring Service base class for BlatAssociationService, provides access to all services and entities referenced by this service.
class	BlatResultServiceImpl	Spring Service base class for BlatResultService, provides access to all services and entities referenced by this service.

Uses of BaseReadOnlyService in ubic.gemma.persistence.service.genome.taxon

Subinterfaces of BaseReadOnlyService in ubic.gemma.persistence.service.genome.taxon

Modifier and Type	Interface	Description
interface	TaxonService

Classes in ubic.gemma.persistence.service.genome.taxon that implement BaseReadOnlyService

Modifier and Type	Class	Description
class	TaxonServiceImpl

Uses of BaseReadOnlyService in ubic.gemma.persistence.util

Constructors in ubic.gemma.persistence.util with parameters of type BaseReadOnlyService

Constructor	Description
ServiceBasedEntityConverter(BaseReadOnlyService<? extends O> service, Class<O> entityType)