Uses of Package
ubic.gemma.persistence.util

Packages that use ubic.gemma.persistence.util

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.analysis.service
ubic.gemma.core.datastructure.matrix.io	This package contains I/O utilities for reading and writing expression data matrices.
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.ontology
ubic.gemma.core.visualization
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util
ubic.gemma.rest.util.args
ubic.gemma.web.controller.expression.experiment
ubic.gemma.web.util

Classes in ubic.gemma.persistence.util used by ubic.gemma.apps

Class	Description
EntityUrlBuilder	This builder allows for generating URLs for entities in Gemma Web and REST.

Classes in ubic.gemma.persistence.util used by ubic.gemma.core.analysis.service

Class	Description
EntityUrlBuilder	This builder allows for generating URLs for entities in Gemma Web and REST.

Classes in ubic.gemma.persistence.util used by ubic.gemma.core.datastructure.matrix.io

Class	Description
EntityUrlBuilder	This builder allows for generating URLs for entities in Gemma Web and REST.

Classes in ubic.gemma.persistence.util used by ubic.gemma.core.loader.expression.geo.service

Class	Description
Slice	Represents a slice of List.

Classes in ubic.gemma.persistence.util used by ubic.gemma.core.ontology

Class	Description
EntityUrlBuilder	This builder allows for generating URLs for entities in Gemma Web and REST.
Slice	Represents a slice of List.

Classes in ubic.gemma.persistence.util used by ubic.gemma.core.visualization

Class	Description
Slice	Represents a slice of List.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service

Class	Description
Filter	Holds the necessary information to filter an entity with a property, operator and right-hand side value.
Filter.Operator
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.
Sort.Direction	Direction of the sort.
Sort.NullMode
SubqueryMode	Mode to use when filtering with a subquery.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.analysis.expression.diff

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.common.auditAndSecurity

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.common.auditAndSecurity.curation

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.expression.arrayDesign

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.expression.bioAssayData

Class	Description
Slice	Represents a slice of List.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.expression.designElement

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.expression.experiment

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.genome

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.service.genome.taxon

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.persistence.util

Class	Description
DescribableComparator
DifferentialExpressionAnalysisResultComparator
EntityUrlBuilder.AllEntitiesUrl
EntityUrlBuilder.AllRestEntitiesUrl
EntityUrlBuilder.AllWebEntitiesUrl
EntityUrlBuilder.ArrayDesignUrl
EntityUrlBuilder.ArrayDesignWebUrl
EntityUrlBuilder.EntityUrl	Represents a URL for an Identifiable entity.
EntityUrlBuilder.EntityUrlChooser	Allows for choosing a specific entity.
EntityUrlBuilder.ExperimentalDesignWebUrl
EntityUrlBuilder.ExpressionExperimentUrl
EntityUrlBuilder.ExpressionExperimentWebUrl
EntityUrlBuilder.OntologyEntityUrl
EntityUrlBuilder.RestEntityUrl	Generate a URL for Gemma REST.
EntityUrlBuilder.SomeEntitiesUrl
EntityUrlBuilder.SomeRestEntitiesUrl
EntityUrlBuilder.SomeWebEntitiesUrl
EntityUrlBuilder.WebEntityUrl	Generate a URL for Gemma Web.
FactorValueComparator
Filter	Holds the necessary information to filter an entity with a property, operator and right-hand side value.
Filter.Operator
Filters	Represents a conjunction of disjunctions of Filter.
Filters.FiltersClauseBuilder	Builder for a disjunctive sub-clause.
PropertyMapping	Represents a mapping between a query/criteria property and some original property space.
ServiceBasedEntityConverter	Performs conversion by identifier and collection of identifier for a BaseReadOnlyService.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.
Sort.Direction	Direction of the sort.
Sort.NullMode
Subquery	Represents a subquery right-hand side of a Filter.
Subquery.Alias
SubqueryMode	Mode to use when filtering with a subquery.

Classes in ubic.gemma.persistence.util used by ubic.gemma.rest

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.rest.util

Class	Description
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.rest.util.args

Class	Description
Filter	Holds the necessary information to filter an entity with a property, operator and right-hand side value.
Filters	Represents a conjunction of disjunctions of Filter.
Slice	Represents a slice of List.
Sort	Represents a directed sort by a property.

Classes in ubic.gemma.persistence.util used by ubic.gemma.web.controller.expression.experiment

Class	Description
FactorValueVector

Classes in ubic.gemma.persistence.util used by ubic.gemma.web.util

Class	Description
EntityUrlBuilder	This builder allows for generating URLs for entities in Gemma Web and REST.
EntityUrlBuilder.EntityUrlChooser	Allows for choosing a specific entity.