Uses of Class
ubic.gemma.persistence.util.Sort
Packages that use Sort
Package
Description
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Uses of Sort in ubic.gemma.persistence.service
Methods in ubic.gemma.persistence.service that return SortModifier and TypeMethodDescriptionfinal SortAbstractFilteringVoEnabledDao.getSort(String property, Sort.Direction direction, Sort.NullMode nullMode) AbstractFilteringVoEnabledService.getSort(String property, Sort.Direction direction, Sort.NullMode nullMode) final SortAbstractNoopFilteringVoEnabledDao.getSort(String property, Sort.Direction direction, Sort.NullMode nullMode) FilteringDao.getSort(String property, Sort.Direction direction, Sort.NullMode nullMode) FilteringService.getSort(String property, Sort.Direction direction, Sort.NullMode last) Methods in ubic.gemma.persistence.service with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.Query<?> AbstractQueryFilteringVoEnabledDao.getFilteringIdQuery(Filters filters, Sort sort) protected abstract org.hibernate.query.Query<?> AbstractQueryFilteringVoEnabledDao.getFilteringQuery(Filters filters, Sort sort) Produce a query for retrieving filtered entities or VOs after applying filters and ordering.Load entities matching the given filters.Load a slice of entities matching the given filters.Load IDs of entities matching the given filters.AbstractQueryFilteringVoEnabledDao.loadIdsWithCache(Filters filters, Sort sort) CachedFilteringDao.loadIdsWithCache(Filters filters, Sort sort) AbstractCriteriaFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort) AbstractCriteriaFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort, int offset, int limit) AbstractFilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort) AbstractFilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort, int offset, int limit) AbstractNoopFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort) AbstractNoopFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort, int offset, int limit) AbstractQueryFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort) AbstractQueryFilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort, int offset, int limit) FilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort) Load VOs with minimal ordering and filtering.FilteringVoEnabledDao.loadValueObjects(Filters filters, Sort sort, int offset, int limit) Load VOs with ordering, filtering and offset/limit.FilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort) FilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort, int offset, int limit) AbstractFilteringVoEnabledService.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) AbstractQueryFilteringVoEnabledDao.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) default CursorPage<VO> FilteringVoEnabledDao.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Load VOs by keyset (cursor) pagination.default CursorPage<VO> FilteringVoEnabledService.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Keyset (cursor) pagination — service-layer pass-through toFilteringVoEnabledDao.loadValueObjectsByCursor(Filters, Sort, Cursor, int).AbstractQueryFilteringVoEnabledDao.loadValueObjectsByCursorWithCache(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-paged sister ofAbstractQueryFilteringVoEnabledDao.loadValueObjectsWithCache(Filters, Sort, int, int).AbstractQueryFilteringVoEnabledDao.loadValueObjectsWithCache(Filters filters, Sort sort) AbstractQueryFilteringVoEnabledDao.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) CachedFilteringVoEnabledDao.loadValueObjectsWithCache(Filters filters, Sort sort) CachedFilteringVoEnabledDao.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) AbstractQueryFilteringVoEnabledDao.loadWithCache(Filters filters, Sort sort) AbstractQueryFilteringVoEnabledDao.loadWithCache(Filters filters, Sort sort, int offset, int limit) CachedFilteringDao.loadWithCache(Filters filters, Sort sort) CachedFilteringDao.loadWithCache(Filters filters, Sort sort, int offset, int limit) -
Uses of Sort in ubic.gemma.persistence.service.analysis.expression.diff
Methods in ubic.gemma.persistence.service.analysis.expression.diff with parameters of type SortModifier and TypeMethodDescriptionExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort) Retrieve result sets associated to a set ofBioAssaySetand external database entries.ExpressionAnalysisResultSetDaoImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort) ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort) ExpressionAnalysisResultSetServiceImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort) -
Uses of Sort in ubic.gemma.persistence.service.common.auditAndSecurity
Methods in ubic.gemma.persistence.service.common.auditAndSecurity with parameters of type SortModifier and TypeMethodDescriptionSecurableFilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort) SecurableFilteringVoEnabledService.loadValueObjects(Filters filters, Sort sort, int offset, int limit) -
Uses of Sort in ubic.gemma.persistence.service.common.auditAndSecurity.curation
Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type SortModifier and TypeMethodDescriptionprotected StringAbstractCuratableDao.groupByIfNecessary(Sort sort, String... oneToManyAliases) If the sort refers to one of the one-to-many relations, multiple rows will be returned per entity, so the query has to use agroup byclause to keep pagination correct. -
Uses of Sort in ubic.gemma.persistence.service.expression.arrayDesign
Methods in ubic.gemma.persistence.service.expression.arrayDesign with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.QueryArrayDesignDaoImpl.getFilteringIdQuery(Filters filters, Sort sort) protected org.hibernate.query.QueryArrayDesignDaoImpl.getFilteringQuery(Filters filters, Sort sort) ArrayDesignDao.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ArrayDesignDaoImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ArrayDesignReadService.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ArrayDesignReadServiceImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ArrayDesignService.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) No need for ACL_VALUE_OBJECT_COLLECTION_READ because the filtering is done in the query.ArrayDesignServiceImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ArrayDesignDao.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toArrayDesignDao.loadBlacklistedValueObjects(Filters, Sort, int, int): keyset pagination over the blacklisted platforms, applying the same shortName/accession blacklist filter that the offset-mode variant composes — seeCURSOR_PAGINATION_STEP1_PLAN.mdstep 1h.ArrayDesignDaoImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ArrayDesignReadService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toArrayDesignReadService.loadBlacklistedValueObjects(Filters, Sort, int, int).ArrayDesignReadServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ArrayDesignService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toArrayDesignService.loadBlacklistedValueObjects(Filters, Sort, int, int)— seeCURSOR_PAGINATION_STEP1_PLAN.mdstep 1h.ArrayDesignServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ArrayDesignReadService.loadValueObjectsWithCache(Filters filters, Sort sort) ArrayDesignReadServiceImpl.loadValueObjectsWithCache(Filters filters, Sort sort) ArrayDesignService.loadValueObjectsWithCache(Filters filters, Sort sort) ArrayDesignServiceImpl.loadValueObjectsWithCache(Filters filters, Sort sort) -
Uses of Sort in ubic.gemma.persistence.service.expression.designElement
Methods in ubic.gemma.persistence.service.expression.designElement with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.QueryCompositeSequenceDaoImpl.getFilteringIdQuery(Filters filters, Sort sort) protected org.hibernate.query.QueryCompositeSequenceDaoImpl.getFilteringQuery(Filters filters, Sort sort) -
Uses of Sort in ubic.gemma.persistence.service.expression.experiment
Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.QueryExpressionExperimentDaoImpl.getFilteringIdQuery(Filters filters, Sort sort) protected org.hibernate.query.QueryExpressionExperimentDaoImpl.getFilteringQuery(Filters filters, Sort sort) ExpressionExperimentDao.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentDaoImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentReadService.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentReadServiceImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentService.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentServiceImpl.loadBlacklistedValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentDao.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toExpressionExperimentDao.loadBlacklistedValueObjects(Filters, Sort, int, int): keyset pagination over the blacklisted-experiment view.ExpressionExperimentDaoImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ExpressionExperimentReadService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toExpressionExperimentReadService.loadBlacklistedValueObjects(Filters, Sort, int, int).ExpressionExperimentReadServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ExpressionExperimentService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) Cursor-mode counterpart toExpressionExperimentService.loadBlacklistedValueObjects(Filters, Sort, int, int).ExpressionExperimentServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit) ExpressionExperimentDao.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) Special method for front-end access.ExpressionExperimentDaoImpl.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentReadService.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentReadServiceImpl.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentService.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentServiceImpl.loadDetailsValueObjects(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentDao.loadDetailsValueObjectsByIdsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) Flavour ofExpressionExperimentDao.loadDetailsValueObjectsByIds(Collection), but using the query cache.ExpressionExperimentDaoImpl.loadDetailsValueObjectsByIdsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentReadService.loadDetailsValueObjectsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentReadServiceImpl.loadDetailsValueObjectsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentService.loadDetailsValueObjectsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentServiceImpl.loadDetailsValueObjectsWithCache(Collection<Long> ids, Taxon taxon, Sort sort, int offset, int limit) ExpressionExperimentReadService.loadIdsWithCache(Filters filters, Sort sort) ExpressionExperimentReadServiceImpl.loadIdsWithCache(Filters filters, Sort sort) ExpressionExperimentService.loadIdsWithCache(Filters filters, Sort sort) ExpressionExperimentServiceImpl.loadIdsWithCache(Filters filters, Sort sort) ExpressionExperimentDaoImpl.loadValueObjects(Filters filters, Sort sort) ExpressionExperimentDaoImpl.loadValueObjects(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentReadService.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentReadServiceImpl.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentService.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentServiceImpl.loadValueObjectsWithCache(Filters filters, Sort sort, int offset, int limit) ExpressionExperimentDao.loadWithCache(Filters filters, Sort sort) -
Uses of Sort in ubic.gemma.persistence.service.genome
Methods in ubic.gemma.persistence.service.genome with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.QueryGeneDaoImpl.getFilteringQuery(Filters filters, Sort sort) -
Uses of Sort in ubic.gemma.persistence.service.genome.taxon
Methods in ubic.gemma.persistence.service.genome.taxon with parameters of type SortModifier and TypeMethodDescriptionprotected org.hibernate.query.Query<?> TaxonDaoImpl.getFilteringQuery(Filters filters, Sort sort) -
Uses of Sort in ubic.gemma.persistence.util
Methods in ubic.gemma.persistence.util that return SortModifier and TypeMethodDescriptionAdd a next sort.static SortSort.by(String alias, String propertyName, Sort.Direction direction, Sort.NullMode nullMode) Create a sort without an original property.static SortSort.by(String alias, String propertyName, Sort.Direction direction, Sort.NullMode nullMode, String originalProperty) Create aSortfor a given alias, property and direction.Sort.getAndThen()CursorPage.getSort()Slice.getSort()Methods in ubic.gemma.persistence.util with parameters of type SortModifier and TypeMethodDescriptionAdd a next sort.static booleanFiltersUtils.containsAnyAlias(Filters filters, Sort sort, String... aliases) Check if an alias is mentioned in a set ofFilter.static StringFilterQueryUtils.formOrderByClause(Sort sort) Forms an order by clause for a Hibernate query based on given arguments.Constructors in ubic.gemma.persistence.util with parameters of type Sort -
Uses of Sort in ubic.gemma.rest
Constructors in ubic.gemma.rest with parameters of type SortModifierConstructorDescriptionQueriedAndFilteredAndInferredAndLimitedResponseDataObject(List<T> payload, String query, Filters filters, String[] groupBy, Sort sort, Integer limit, Collection<OntologyTerm> inferredTerms) QueriedAndFilteredAndInferredResponseDataObject(List<T> payload, String query, Filters filters, String[] groupBy, Sort sort, Collection<OntologyTerm> inferredTerms) -
Uses of Sort in ubic.gemma.rest.util
Methods in ubic.gemma.rest.util with parameters of type SortModifier and TypeMethodDescriptionstatic <T> QueriedAndFilteredResponseDataObject<T> static <T> FilteredResponseDataObject<T> Produce all results.static <T> FilteredAndPaginatedResponseDataObject<T> Responders.paginate(Responders.FilterMethod<T> filterMethod, Filters filters, String[] groupBy, Sort sort, int offset, int limit) Paginate results with a filter using a callback to produce the payload.static <T> FilteredAndLimitedResponseDataObject<T> Produce top results.Constructors in ubic.gemma.rest.util with parameters of type SortModifierConstructorDescriptionFilteredAndLimitedResponseDataObject(List<T> payload, Filters filters, String[] groupBy, Sort sort, Integer limit) QueriedAndFilteredAndLimitedResponseDataObject(List<T> payload, String query, Filters filters, String[] groupBy, Sort sort, Integer limit) QueriedAndFilteredResponseDataObject(List<T> payload, String query, Filters filters, String[] groupBy, Sort sort) SortValueObject(Sort sort) -
Uses of Sort in ubic.gemma.rest.util.args
Methods in ubic.gemma.rest.util.args that return Sort