Uses of Class
ubic.gemma.persistence.util.CursorPage

Packages that use CursorPage

Package	Description
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util
ubic.gemma.rest.util.args

Uses of CursorPage in ubic.gemma.persistence.service

Methods in ubic.gemma.persistence.service that return CursorPage

Modifier and Type	Method	Description
CursorPage<VO>	AbstractFilteringVoEnabledService.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
CursorPage<VO>	AbstractQueryFilteringVoEnabledDao.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
default CursorPage<VO>	FilteringVoEnabledDao.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Load VOs by keyset (cursor) pagination.
default CursorPage<VO>	FilteringVoEnabledService.loadValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Keyset (cursor) pagination — service-layer pass-through to FilteringVoEnabledDao.loadValueObjectsByCursor(Filters, Sort, Cursor, int).
CursorPage<VO>	AbstractQueryFilteringVoEnabledDao.loadValueObjectsByCursorWithCache(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-paged sister of AbstractQueryFilteringVoEnabledDao.loadValueObjectsWithCache(Filters, Sort, int, int).

Uses of CursorPage in ubic.gemma.persistence.service.analysis.expression.diff

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return CursorPage

Modifier and Type	Method	Description
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)	Cursor-paged counterpart to ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort): keyset pagination over the result sets associated to a set of BioAssaySet and external database entries, always sorted by ascending id.
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDaoImpl.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, Cursor cursor, int limit)	Cursor-paged counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort).
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetServiceImpl.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.service.common.auditAndSecurity

Methods in ubic.gemma.persistence.service.common.auditAndSecurity that return CursorPage

Modifier and Type	Method	Description
CursorPage<AuditEvent>	AuditEventDao.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)	Keyset-pagination counterpart to AuditEventDao.getEvents(Auditable) — cursor mode for GET /datasets/{dataset}/auditEvents (step 1q of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<AuditEvent>	AuditEventDaoImpl.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)
CursorPage<AuditEvent>	AuditEventService.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)	Keyset-pagination counterpart to AuditEventService.getEvents(Auditable) for the GET /datasets/{dataset}/auditEvents endpoint — see CURSOR_PAGINATION_STEP1_PLAN.md step 1q.
CursorPage<AuditEvent>	AuditEventServiceImpl.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation that return CursorPage

Modifier and Type	Method	Description
CursorPage<TicketEvent>	TicketDao.findEventsByCursor(Ticket ticket, Cursor cursor, int limit)	Keyset-pagination counterpart to the Ticket.events collection on a single ticket — cursor mode for GET /tickets/{id}/events (step 1r of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<TicketEvent>	TicketDaoImpl.findEventsByCursor(Ticket ticket, Cursor cursor, int limit)
CursorPage<TicketEvent>	TicketService.findEventsByCursor(Ticket ticket, Cursor cursor, int limit)
CursorPage<TicketEvent>	TicketServiceImpl.findEventsByCursor(Ticket ticket, Cursor cursor, int limit)
CursorPage<Ticket>	TicketDao.findOpenForTargetByCursor(TicketTargetType targetType, Long targetId, Cursor cursor, int limit)	Keyset-pagination counterpart to TicketDao.findOpenForTarget(TicketTargetType, Long) — cursor mode for GET /datasets/{dataset}/tickets and the GET /platforms/{platform}/tickets sibling (step 1p of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<Ticket>	TicketDaoImpl.findOpenForTargetByCursor(TicketTargetType targetType, Long targetId, Cursor cursor, int limit)
CursorPage<Ticket>	TicketService.findOpenForTargetByCursor(TicketTargetType targetType, Long targetId, Cursor cursor, int limit)
CursorPage<Ticket>	TicketServiceImpl.findOpenForTargetByCursor(TicketTargetType targetType, Long targetId, Cursor cursor, int limit)
CursorPage<Ticket>	TicketDao.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, TicketType type, TicketState state, TicketTargetType targetType, Date updatedSince, Cursor cursor, int limit)	Extended-filter cursor-mode counterpart to TicketDao.findTickets(boolean, Long, TicketPriority, TicketType, TicketState, TicketTargetType, Date, int, int).
CursorPage<Ticket>	TicketDao.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, Cursor cursor, int limit)	Keyset-pagination counterpart to TicketDao.findTickets(boolean, Long, TicketPriority, int, int) — cursor mode for GET /tickets (step 1o of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<Ticket>	TicketDaoImpl.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, TicketType type, TicketState state, TicketTargetType targetType, Date updatedSince, Cursor cursor, int limit)
CursorPage<Ticket>	TicketDaoImpl.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, Cursor cursor, int limit)
CursorPage<Ticket>	TicketService.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, TicketType type, TicketState state, TicketTargetType targetType, Date updatedSince, Cursor cursor, int limit)
CursorPage<Ticket>	TicketService.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, Cursor cursor, int limit)
CursorPage<Ticket>	TicketServiceImpl.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, TicketType type, TicketState state, TicketTargetType targetType, Date updatedSince, Cursor cursor, int limit)
CursorPage<Ticket>	TicketServiceImpl.findTicketsByCursor(boolean openOnly, Long assigneeId, TicketPriority priority, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.service.expression.arrayDesign

Methods in ubic.gemma.persistence.service.expression.arrayDesign that return CursorPage

Modifier and Type	Method	Description
CursorPage<ArrayDesignValueObject>	ArrayDesignDao.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ArrayDesignDao.loadBlacklistedValueObjects(Filters, Sort, int, int): keyset pagination over the blacklisted platforms, applying the same shortName/accession blacklist filter that the offset-mode variant composes — see CURSOR_PAGINATION_STEP1_PLAN.md step 1h.
CursorPage<ArrayDesignValueObject>	ArrayDesignDaoImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
CursorPage<ArrayDesignValueObject>	ArrayDesignReadService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ArrayDesignReadService.loadBlacklistedValueObjects(Filters, Sort, int, int).
CursorPage<ArrayDesignValueObject>	ArrayDesignReadServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
CursorPage<ArrayDesignValueObject>	ArrayDesignService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ArrayDesignService.loadBlacklistedValueObjects(Filters, Sort, int, int) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1h.
CursorPage<ArrayDesignValueObject>	ArrayDesignServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.service.expression.bioAssay

Methods in ubic.gemma.persistence.service.expression.bioAssay that return CursorPage

Modifier and Type	Method	Description
CursorPage<BioAssayValueObject>	BioAssayDao.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)	Cursor-paged listing of BioAssayValueObjects for a single ExpressionExperiment, sorted by ascending id — see CURSOR_PAGINATION_STEP1_PLAN.md step 1k.
CursorPage<BioAssayValueObject>	BioAssayDaoImpl.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayReadService.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayReadServiceImpl.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayService.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)	Cursor-mode counterpart to the legacy unpaginated BioAssayDao EE-scoped sample listing — see CURSOR_PAGINATION_STEP1_PLAN.md step 1k.
CursorPage<BioAssayValueObject>	BioAssayServiceImpl.loadValueObjectsByCursorForExpressionExperiment(ExpressionExperiment ee, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayDao.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)	Cursor-paged listing of BioAssayValueObjects for a single ExpressionExperimentSubSet, sorted by ascending id — see CURSOR_PAGINATION_STEP1_PLAN.md step 1u (the subset-scoped twin of step 1k).
CursorPage<BioAssayValueObject>	BioAssayDaoImpl.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayReadService.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayReadServiceImpl.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)
CursorPage<BioAssayValueObject>	BioAssayService.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)	Cursor-mode counterpart to the legacy unpaginated subset-scoped sample listing — see CURSOR_PAGINATION_STEP1_PLAN.md step 1u.
CursorPage<BioAssayValueObject>	BioAssayServiceImpl.loadValueObjectsByCursorForSubSet(ExpressionExperimentSubSet subset, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.service.expression.designElement

Methods in ubic.gemma.persistence.service.expression.designElement that return CursorPage

Modifier and Type	Method	Description
CursorPage<CompositeSequence>	CompositeSequenceDao.findByGeneByCursor(Gene gene, Cursor cursor, int limit, boolean useGene2Cs)	Cursor-paged listing of CompositeSequences associated with a single Gene across all platforms — see CURSOR_PAGINATION_STEP1_PLAN.md step 1m.
CursorPage<CompositeSequence>	CompositeSequenceDaoImpl.findByGeneByCursor(Gene gene, Cursor cursor, int limit, boolean useGene2Cs)
CursorPage<Gene>	CompositeSequenceDao.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)	Cursor-paged listing of Genes associated with a single CompositeSequence — see CURSOR_PAGINATION_STEP1_PLAN.md step 1l.
CursorPage<Gene>	CompositeSequenceDaoImpl.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)
CursorPage<Gene>	CompositeSequenceReadService.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)
CursorPage<Gene>	CompositeSequenceReadServiceImpl.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)
CursorPage<Gene>	CompositeSequenceService.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)	Cursor-mode counterpart to CompositeSequenceService.getGenes(CompositeSequence, int, int, boolean) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1l.
CursorPage<Gene>	CompositeSequenceServiceImpl.getGenesByCursor(CompositeSequence compositeSequence, Cursor cursor, int limit, boolean useGene2Cs)
CursorPage<CompositeSequenceValueObject>	CompositeSequenceService.loadValueObjectsForGeneByCursor(Gene gene, Cursor cursor, int limit, boolean useGene2Cs)	Cursor-mode counterpart to CompositeSequenceService.loadValueObjectsForGene(Gene, int, int, boolean) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1m.
CursorPage<CompositeSequenceValueObject>	CompositeSequenceServiceImpl.loadValueObjectsForGeneByCursor(Gene gene, Cursor cursor, int limit, boolean useGene2Cs)

Uses of CursorPage in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return CursorPage

Modifier and Type	Method	Description
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentDao.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionExperimentDao.loadBlacklistedValueObjects(Filters, Sort, int, int): keyset pagination over the blacklisted-experiment view.
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentDaoImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentReadService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionExperimentReadService.loadBlacklistedValueObjects(Filters, Sort, int, int).
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentReadServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentService.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionExperimentService.loadBlacklistedValueObjects(Filters, Sort, int, int).
CursorPage<ExpressionExperimentValueObject>	ExpressionExperimentServiceImpl.loadBlacklistedValueObjectsByCursor(Filters filters, Sort sort, Cursor cursor, int limit)

Uses of CursorPage in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util that return CursorPage

Modifier and Type	Method	Description
<S> CursorPage<S>	CursorPage.map(Function<? super O, ? extends S> converter)

Uses of CursorPage in ubic.gemma.rest

Methods in ubic.gemma.rest that return CursorPage

Modifier and Type	Method	Description
CursorPage<TicketValueObject>	TicketsWebService.openTicketsForArrayDesignByCursor(Long adId, Cursor cursor, int limit)	Cursor-mode counterpart to TicketsWebService.openTicketsForArrayDesign(Long) (step 1s of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<TicketValueObject>	TicketsWebService.openTicketsForExpressionExperimentByCursor(Long eeId, Cursor cursor, int limit)	Cursor-mode counterpart to TicketsWebService.openTicketsForExpressionExperiment(Long) (step 1p of CURSOR_PAGINATION_STEP1_PLAN.md).

Constructors in ubic.gemma.rest with parameters of type CursorPage

Modifier	Constructor	Description
	CursorPaginatedResponseDataObjectAuditEventValueObject(CursorPage<AuditEventValueObject> payload, String[] groupBy)
	CursorPaginatedResponseDataObjectBioAssayValueObject(CursorPage<BioAssayValueObject> payload, String[] groupBy)
	CursorPaginatedResponseDataObjectCompactAuditEventValueObject(CursorPage<CompactAuditEventValueObject> payload, String[] groupBy)
	CursorPaginatedResponseDataObjectTicketValueObject(CursorPage<TicketValueObject> payload, String[] groupBy)
	FilteredAndInferredAndCursorPaginatedResponseDataObject(CursorPage<T> payload, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)
	FilteredAndInferredAndCursorPaginatedResponseDataObjectExpressionExperimentValueObject(CursorPage<ExpressionExperimentValueObject> payload, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)
	QueriedAndFilteredAndInferredAndCursorPaginatedResponseDataObject(CursorPage<T> payload, String query, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)
	QueriedAndFilteredAndInferredAndCursorPaginatedResponseDataObjectExperimentExpressionLevelsValueObject(CursorPage<ExperimentExpressionLevelsValueObject> payload, String query, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)

Uses of CursorPage in ubic.gemma.rest.util

Methods in ubic.gemma.rest.util with parameters of type CursorPage

Modifier and Type	Method	Description
static <T> CursorPaginatedResponseDataObject<T>	Responders.paginateByCursor(CursorPage<T> payload, String[] groupBy)	Paginate a CursorPage into the cursor-mode response wrapper.

Constructors in ubic.gemma.rest.util with parameters of type CursorPage

Modifier	Constructor	Description
	CursorPaginatedResponseDataObject(CursorPage<T> payload, String[] groupBy)
	FilteredAndCursorPaginatedResponseDataObject(CursorPage<T> payload, Filters filters, String[] groupBy)
	QueriedAndFilteredAndCursorPaginatedResponseDataObject(CursorPage<T> payload, String query, Filters filters, String[] groupBy)

Uses of CursorPage in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return CursorPage

Modifier and Type	Method	Description
CursorPage<ExpressionExperimentValueObject>	DatasetArgService.getBlacklistedDatasetsByCursor(Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionExperimentService.loadBlacklistedValueObjects(Filters, Sort, int, int).
CursorPage<ArrayDesignValueObject>	PlatformArgService.getBlacklistedPlatformsByCursor(Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to ArrayDesignService.loadBlacklistedValueObjects(Filters, Sort, int, int).
CursorPage<ExpressionExperimentValueObject>	DatasetArgService.getDatasetsByCursor(Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to SecurableFilteringVoEnabledService.loadValueObjects(Filters, Sort, int, int).
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, Cursor cursor, int limit)	Cursor-mode counterpart to PlatformArgService.getElements(PlatformArg, int, int): keyset pagination over the design elements of a single platform, always sorted by ascending id (the primary key, indexed and unique) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1e.
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, Cursor cursor, int limit, boolean withSequence)	Cursor-mode variant of PlatformArgService.getElements(PlatformArg, int, int, boolean).
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, Cursor cursor, int limit, boolean withSequence, boolean withGenes, Collection<Long> geneIds)	Cursor-mode variant of PlatformArgService.getElements(PlatformArg, int, int, boolean, boolean, Collection).
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, Filters userFilters, Collection<Long> geneIds, Cursor cursor, int limit, boolean withSequence, boolean withGenes)	Widest cursor-mode variant; see PlatformArgService.getElements(PlatformArg, Filters, Collection, int, int, boolean, boolean).
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, CompositeSequenceArrayArg probesArg, Cursor cursor, int limit)	Cursor-mode counterpart to FilteringVoEnabledService.loadValueObjects(Filters, Sort, int, int) scoped to a single platform AND a fixed set of probe identifiers (the /{platform}/elements/{probes} endpoint) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1j.
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, CompositeSequenceArrayArg probesArg, Cursor cursor, int limit, boolean withSequence)	Cursor-mode + probe-set variant of PlatformArgService.getElements(PlatformArg, int, int, boolean).
CursorPage<CompositeSequenceValueObject>	PlatformArgService.getElementsByCursor(PlatformArg<?> arg, CompositeSequenceArrayArg probesArg, Cursor cursor, int limit, boolean withSequence, boolean withGenes)	Cursor-mode + probe-set variant with the opt-in gene column.
CursorPage<ExpressionExperimentValueObject>	PlatformArgService.getExperimentsByCursor(PlatformArg<?> arg, Cursor cursor, int limit)	Cursor-mode counterpart to PlatformArgService.getExperiments(PlatformArg, int, int): keyset pagination over the datasets that use a single platform, always sorted by ascending id (the primary key, indexed and unique) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1f.
CursorPage<CompositeSequenceValueObject>	GeneArgService.getGeneProbesByCursor(GeneArg<?> geneArg, Cursor cursor, int limit)	Cursor-mode counterpart to GeneArgService.getGeneProbes(GeneArg, int, int): keyset pagination over the probes (composite sequences) mapped to a single gene across all platforms — see CURSOR_PAGINATION_STEP1_PLAN.md step 1m.
CursorPage<CompositeSequenceValueObject>	GeneArgService.getGeneProbesInTaxonByCursor(GeneArg<?> geneArg, Taxon taxon, Cursor cursor, int limit)	Cursor-mode counterpart to GeneArgService.getGeneProbesInTaxon(GeneArg, Taxon, int, int): keyset pagination over the probes (composite sequences) mapped to a single gene in the given taxon across all platforms — see CURSOR_PAGINATION_STEP1_PLAN.md step 1n.
CursorPage<Gene>	CompositeSequenceArgService.getGenesByCursor(CompositeSequenceArg<?> probeArg, ArrayDesign platform, Cursor cursor, int limit)	Cursor-mode counterpart to CompositeSequenceService.getGenes(CompositeSequence, int, int, boolean) scoped to a single probe on a single platform (the /{platform}/elements/{probe}/genes endpoint) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1l.
CursorPage<GeneValueObject>	GeneArgService.getGenesByCursor(Cursor cursor, int limit)	Cursor-mode counterpart to GeneArgService.getGenes(int, int): keyset pagination over genes, always sorted by ascending id (the primary key, indexed and unique).
CursorPage<GeneValueObject>	GeneArgService.getGenesInTaxonByCursor(Taxon taxon, Cursor cursor, int limit)	Cursor-mode counterpart to GeneArgService.getGenesInTaxon(Taxon, int, int): keyset pagination over the genes belonging to a single taxon, always sorted by ascending id (the primary key, indexed and unique) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1g.
CursorPage<ArrayDesignValueObject>	PlatformArgService.getPlatformsByCursor(Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to SecurableFilteringVoEnabledService.loadValueObjects(Filters, Sort, int, int).
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetArgService.getResultSetsByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort).
CursorPage<BioAssayValueObject>	DatasetArgService.getSamplesByCursor(DatasetArg<?> arg, Cursor cursor, int limit, boolean includePredictedOutliers)	Cursor-mode counterpart to DatasetArgService.getSamples(DatasetArg, boolean) for the GET /datasets/{dataset}/samples endpoint — see CURSOR_PAGINATION_STEP1_PLAN.md step 1k.
CursorPage<BioAssayValueObject>	DatasetArgService.getSubSetSamplesByCursor(DatasetArg<?> datasetArg, Long subSetId, Cursor cursor, int limit, boolean includePredictedOutliers)	Cursor-mode counterpart to DatasetArgService.getSubSetSamples(DatasetArg, Long, boolean) for the GET /datasets/{dataset}/subSets/{subSet}/samples endpoint — see CURSOR_PAGINATION_STEP1_PLAN.md step 1u (the subset-scoped twin of step 1k for GET /datasets/{dataset}/samples).