Uses of Annotation Interface
ubic.gemma.rest.annotations.GZIP

Packages that use GZIP

Package	Description
ubic.gemma.rest
ubic.gemma.rest.providers

Uses of GZIP in ubic.gemma.rest

Methods in ubic.gemma.rest with annotations of type GZIP

Modifier and Type	Method	Description
ResponseDataObject<Set<AnnotationValueObject>>	DatasetsWebService.getDatasetAnnotations(DatasetArg<?> datasetArg, Boolean includeFreeText)	Retrieves the annotations for the given dataset.
Object	DatasetsWebService.getDatasetAuditEvents(DatasetArg<?> datasetArg, CursorArg cursorArg, LimitArg limitArg, boolean compact, boolean excludeEmpty)
Object	DatasetsWebService.getDatasetCellLevelCharacteristics(DatasetArg<?> datasetArg, QuantitationTypeArg<?> qtArg, jakarta.ws.rs.core.HttpHeaders headers)
Object	DatasetsWebService.getDatasetCellTypeAssignment(DatasetArg<?> datasetArg, QuantitationTypeArg<?> qtArg, String ctaName, String protocolName, ExcludeArg<CellTypeAssignmentValueObject> excludeArg, Boolean useBioAssayId, jakarta.ws.rs.core.HttpHeaders headers)
jakarta.ws.rs.core.Response	DatasetsWebService.getDatasetDesign(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, Boolean useProcessedQuantitationType, Boolean download, Boolean force)	Retrieves the design for the given dataset.
ResponseDataObject<ExperimentalDesignValueObject>	DatasetsWebService.getDatasetDesignJson(DatasetArg<?> datasetArg)	Retrieves the structured experimental design for the given dataset as JSON.
jakarta.ws.rs.core.Response	DatasetsWebService.getDatasetExpression(DatasetArg<?> datasetArg, Boolean filterData, Boolean download, Boolean force)	Retrieves the data for the given dataset.
ResponseDataObject<HeatmapDataValueObject>	DatasetVisualizationWebService.getDatasetHeatmapData(DatasetArg<?> datasetArg, String genesCsv, String probesCsv, Long resultSetId, Double threshold, Integer pcaComponent, Integer pcaCount, Integer sampleSize, String encoding, Long subSetId, QuantitationTypeArg<?> quantitationTypeArg, boolean maskOutliers)	Resolve raw matrix + metadata for a client-rendered heatmap.
ResponseDataObject<DatasetsWebService.MeanVarianceValueObject>	DatasetsWebService.getDatasetMeanVariance(DatasetArg<?> datasetArg)	Retrieves the per-probe mean / variance pre-computed by MeanVarianceService.
jakarta.ws.rs.core.Response	DatasetsWebService.getDatasetProcessedExpression(DatasetArg<?> datasetArg, Boolean filtered, Boolean download, Boolean force)	Retrieve processed expression data.
ResponseDataObject<DatasetsWebService.SequencingQcMetricsValueObject>	DatasetsWebService.getDatasetQcMetrics(DatasetArg<?> datasetArg)	Retrieves the per-sample sequencing QC metrics for a dataset — read depth, mapping rate, duplication and the rest of the RNA-Seq pipeline's MultiQC general statistics — keyed by bioAssay id.
jakarta.ws.rs.core.Response	DatasetsWebService.getDatasetRawExpression(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, Boolean download, Boolean force)	Retrieve raw expression data.
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject>	DatasetsWebService.getDatasets(QueryArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, SortArg<ExpressionExperiment> sortArg)
ResponseDataObject<DatasetsWebService.SampleCorrelationMatrixValueObject>	DatasetsWebService.getDatasetSampleCorrelation(DatasetArg<?> datasetArg, DatasetsWebService.CorrelationMatrixChoice which)	Retrieves the sample-sample correlation matrix plus both outlier classifications (curator-flagged + algorithmic), unmasked.
Object	DatasetsWebService.getDatasetSamples(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, boolean useProcessedQuantitationType, CursorArg cursorArg, LimitArg limitArg, ExcludeArg<BioAssayValueObject> excludeArg, boolean includePredictedOutliers)	Retrieves the samples for the given dataset.
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.AnnotationWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsAnnotationsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude, LimitArg limitArg, Integer minFrequency, String category, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms, Boolean includePredicates, Boolean includeObjects)
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, jakarta.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, jakarta.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene in a given taxon.
Object	DatasetsWebService.getDatasetSingleCellDimension(DatasetArg<?> datasetArg, QuantitationTypeArg<?> qtArg, ExcludeArg<SingleCellDimensionValueObject> excludeArg, Boolean useBioAssayIds, jakarta.ws.rs.core.HttpHeaders headers)	Retrieve the single-cell dimension for a given quantitation type.
jakarta.ws.rs.core.Response	DatasetsWebService.getDatasetSingleCellExpression(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, Boolean download, Boolean force, jakarta.ws.rs.core.HttpHeaders headers)
ResponseDataObject<com.fasterxml.jackson.databind.JsonNode>	DatasetsWebService.getDatasetSourceMetadata(DatasetArg<?> datasetArg)
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsPlatformsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit)
jakarta.ws.rs.core.Response	PlatformsWebService.getPlatformAnnotations(PlatformArg<?> platformArg, String typeArg, Boolean download, Boolean force)	Retrieves the annotation file for the given platform.
Object	AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort, CursorArg cursorArg)	Retrieve all AnalysisResultSet matching a set of criteria.
jakarta.ws.rs.core.Response	DatasetsWebService.listDatasetAnnotationSets(DatasetArg<?> datasetArg, String role, String source, String createdBy, String shape)
SearchWebService.SearchResultsResponseDataObject	SearchWebService.search(QueryArg query, DatasetArg<?> datasetArg, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg, boolean useGeneOntology, boolean inferRelations)	Search everything subject to taxon and platform constraints.

Uses of GZIP in ubic.gemma.rest.providers

Methods in ubic.gemma.rest.providers with parameters of type GZIP

Modifier and Type	Method	Description
protected boolean	AbstractGzipHeaderDecorator.isApplicable(jakarta.ws.rs.ext.WriterInterceptorContext context, GZIP a)	Check if the given GZIP annotation applies to the given context.
protected boolean	GzipHeaderDecorator.isApplicable(jakarta.ws.rs.ext.WriterInterceptorContext context, GZIP a)
protected boolean	GzipHeaderDecoratorAfterGZipEncoder.isApplicable(jakarta.ws.rs.ext.WriterInterceptorContext context, GZIP a)