Object |
DatasetsWebService.getDatasetCellLevelCharacteristics(DatasetArg<?> datasetArg,
QuantitationTypeArg<?> qtArg,
javax.ws.rs.core.HttpHeaders headers) |
|
Object |
DatasetsWebService.getDatasetCellTypeAssignment(DatasetArg<?> datasetArg,
QuantitationTypeArg<?> qtArg,
String ctaName,
Boolean useBioAssayId,
javax.ws.rs.core.HttpHeaders headers) |
|
javax.ws.rs.core.Response |
DatasetsWebService.getDatasetDesign(DatasetArg<?> datasetArg,
Boolean download,
Boolean force) |
Retrieves the design for the given dataset.
|
javax.ws.rs.core.Response |
DatasetsWebService.getDatasetExpression(DatasetArg<?> datasetArg,
Boolean filterData,
Boolean download,
Boolean force) |
Retrieves the data for the given dataset.
|
javax.ws.rs.core.Response |
DatasetsWebService.getDatasetProcessedExpression(DatasetArg<?> datasetArg,
Boolean filtered,
Boolean download,
Boolean force) |
Retrieve processed expression data.
|
javax.ws.rs.core.Response |
DatasetsWebService.getDatasetRawExpression(DatasetArg<?> datasetArg,
QuantitationTypeArg<?> quantitationTypeArg,
Boolean download,
Boolean force) |
Retrieve raw expression data.
|
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject> |
DatasetsWebService.getDatasets(QueryArg query,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offsetArg,
LimitArg limitArg,
SortArg<ExpressionExperiment> sortArg) |
|
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> |
DatasetsWebService.getDatasetsAnnotationsUsageStatistics(QueryArg query,
FilterArg<ExpressionExperiment> filter,
ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude,
LimitArg limitArg,
Integer minFrequency,
String category,
StringArrayArg excludedCategoryUris,
Boolean excludeFreeTextCategories,
StringArrayArg excludedTermUris,
Boolean excludeFreeTextTerms,
Boolean excludeUncategorizedTerms,
Boolean retainMentionedTerms) |
|
Object |
DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg,
QueryArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offsetArg,
LimitArg limitArg,
Double threshold,
javax.ws.rs.core.HttpHeaders headers) |
Obtain differential expression analysis results for a given gene.
|
Object |
DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg,
GeneArg<?> geneArg,
QueryArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offsetArg,
LimitArg limitArg,
Double threshold,
javax.ws.rs.core.HttpHeaders headers) |
Obtain differential expression analysis results for a given gene in a given taxon.
|
Object |
DatasetsWebService.getDatasetSingleCellDimension(DatasetArg<?> datasetArg,
QuantitationTypeArg<?> qtArg,
ExcludeArg<SingleCellDimensionValueObject> excludeArg,
Boolean useBioAssayId,
javax.ws.rs.core.HttpHeaders headers) |
Retrieve the single-cell dimension for a given quantitation type.
|
javax.ws.rs.core.Response |
DatasetsWebService.getDatasetSingleCellExpression(DatasetArg<?> datasetArg,
QuantitationTypeArg<?> quantitationTypeArg,
Boolean download,
Boolean force,
javax.ws.rs.core.HttpHeaders headers) |
|
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject> |
DatasetsWebService.getDatasetsPlatformsUsageStatistics(QueryArg query,
FilterArg<ExpressionExperiment> filter,
LimitArg limit) |
|
javax.ws.rs.core.Response |
PlatformsWebService.getPlatformAnnotations(PlatformArg<?> platformArg,
Boolean download,
Boolean force) |
Retrieves the annotation file for the given platform.
|
Object |
AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet,
Double threshold,
OffsetArg offsetArg,
LimitArg limitArg,
Boolean includeFactorValuesInContrasts,
Boolean includeTaxonInGenes,
Boolean excludeResults,
javax.ws.rs.core.HttpHeaders headers) |
|
SearchWebService.SearchResultsResponseDataObject |
SearchWebService.search(QueryArg query,
TaxonArg<?> taxonArg,
PlatformArg<?> platformArg,
List<String> resultTypes,
LimitArg limit,
ExcludeArg<SearchResult<?>> excludeArg) |
Search everything subject to taxon and platform constraints.
|