DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
DatasetsWebService.getBlacklistedDatasets(FilterArg<ExpressionExperiment> filterArg,
SortArg<ExpressionExperiment> sortArg,
OffsetArg offset,
LimitArg limit) |
Browse blacklisted datasets.
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FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject> |
PlatformsWebService.getBlacklistedPlatforms(FilterArg<ArrayDesign> filter,
SortArg<ArrayDesign> sort,
OffsetArg offset,
LimitArg limit) |
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ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>> |
DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg,
OffsetArg offsetArg,
LimitArg limitArg) |
Retrieves the differential analysis results for the given dataset.
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DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject> |
DatasetsWebService.getDatasets(QueryArg query,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offsetArg,
LimitArg limitArg,
SortArg<ExpressionExperiment> sortArg) |
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DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> |
DatasetsWebService.getDatasetsAnnotationsUsageStatistics(QueryArg query,
FilterArg<ExpressionExperiment> filter,
ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude,
LimitArg limitArg,
Integer minFrequency,
String category,
StringArrayArg excludedCategoryUris,
Boolean excludeFreeTextCategories,
StringArrayArg excludedTermUris,
Boolean excludeFreeTextTerms,
Boolean excludeUncategorizedTerms,
Boolean retainMentionedTerms) |
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DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
DatasetsWebService.getDatasetsByIds(DatasetArrayArg datasetsArg,
FilterArg<ExpressionExperiment> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sort) |
Retrieves all datasets matching the given identifiers.
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DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.CategoryWithUsageStatisticsValueObject> |
DatasetsWebService.getDatasetsCategoriesUsageStatistics(QueryArg query,
FilterArg<ExpressionExperiment> filter,
LimitArg limit,
StringArrayArg excludedCategoryUris,
Boolean excludeFreeTextCategories,
StringArrayArg excludedTermUris,
Boolean excludeFreeTextTerms,
Boolean excludeUncategorizedTerms,
Boolean retainMentionedTerms) |
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ResponseDataObject<List<ExperimentExpressionLevelsValueObject>> |
DatasetsWebService.getDatasetsDifferentialExpression(DatasetArrayArg datasets,
Long diffExSet,
Double threshold,
LimitArg limit,
Boolean keepNonSpecific,
ExpLevelConsolidationArg consolidate) |
Retrieves the expression levels of genes highly expressed in the given component on given datasets.
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Object |
DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg,
QueryArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offsetArg,
LimitArg limitArg,
Double threshold,
javax.ws.rs.core.HttpHeaders headers) |
Obtain differential expression analysis results for a given gene.
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Object |
DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg,
GeneArg<?> geneArg,
QueryArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offsetArg,
LimitArg limitArg,
Double threshold,
javax.ws.rs.core.HttpHeaders headers) |
Obtain differential expression analysis results for a given gene in a given taxon.
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PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject> |
DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg,
QueryArg queryArg,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offsetArg,
LimitArg limitArg,
Boolean keepNonSpecific,
ExpLevelConsolidationArg consolidate) |
Retrieve the expression levels of a given gene across all datasets.
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PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject> |
DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg,
GeneArg<?> geneArg,
QueryArg queryArg,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offsetArg,
LimitArg limitArg,
Boolean keepNonSpecific,
ExpLevelConsolidationArg consolidate) |
Retrieve the expression levels of a given gene and taxon across all datasets.
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ResponseDataObject<List<ExperimentExpressionLevelsValueObject>> |
DatasetsWebService.getDatasetsExpressionPca(DatasetArrayArg datasets,
Integer component,
LimitArg limit,
Boolean keepNonSpecific,
ExpLevelConsolidationArg consolidate) |
Retrieves the expression levels of genes highly expressed in the given component on given datasets.
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DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject> |
DatasetsWebService.getDatasetsPlatformsUsageStatistics(QueryArg query,
FilterArg<ExpressionExperiment> filter,
LimitArg limit) |
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ResponseDataObject<List<CoexpressionValueObjectExt>> |
GeneWebService.getGeneGeneCoexpression(GeneArg<?> geneArg,
GeneArg<?> with,
LimitArg limit,
Integer stringency) |
Retrieves the coexpression of two given genes.
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PaginatedResponseDataObject<CompositeSequenceValueObject> |
GeneWebService.getGeneProbes(GeneArg<?> geneArg,
OffsetArg offset,
LimitArg limit) |
Retrieves the probes (composite sequences) with this gene.
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PaginatedResponseDataObject<GeneValueObject> |
GeneWebService.getGenes(OffsetArg offsetArg,
LimitArg limitArg) |
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ResponseDataObject<Set<EvidenceValueObject<? extends PhenotypeAssociation>>> |
PhenotypeWebService.getPhenotypeEvidence(String database,
OffsetArg offset,
LimitArg limit) |
Deprecated.
Finds all evidence with the given external database name.
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PaginatedResponseDataObject<ExpressionExperimentValueObject> |
PlatformsWebService.getPlatformDatasets(PlatformArg<?> platformArg,
OffsetArg offset,
LimitArg limit) |
Retrieves experiments in the given platform.
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FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject> |
PlatformsWebService.getPlatformElement(PlatformArg<?> platformArg,
CompositeSequenceArrayArg probesArg,
OffsetArg offset,
LimitArg limit) |
Retrieves composite sequences (elements) of the given platform.
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FilteredAndPaginatedResponseDataObject<GeneValueObject> |
PlatformsWebService.getPlatformElementGenes(PlatformArg<?> platformArg,
CompositeSequenceArg<?> probeArg,
OffsetArg offset,
LimitArg limit) |
Retrieves the genes on the given platform element.
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PaginatedResponseDataObject<CompositeSequenceValueObject> |
PlatformsWebService.getPlatformElements(PlatformArg<?> platformArg,
OffsetArg offset,
LimitArg limit) |
Retrieves the composite sequences (elements) for the given platform.
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FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject> |
PlatformsWebService.getPlatforms(FilterArg<ArrayDesign> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ArrayDesign> sort) |
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FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject> |
PlatformsWebService.getPlatformsByIds(PlatformArrayArg platformsArg,
FilterArg<ArrayDesign> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ArrayDesign> sort) |
Retrieves all datasets matching the given identifiers.
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Object |
AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet,
Double threshold,
OffsetArg offsetArg,
LimitArg limitArg,
Boolean includeFactorValuesInContrasts,
Boolean includeTaxonInGenes,
Boolean excludeResults,
javax.ws.rs.core.HttpHeaders headers) |
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FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject> |
AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets,
DatabaseEntryArrayArg databaseEntries,
FilterArg<ExpressionAnalysisResultSet> filters,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionAnalysisResultSet> sort) |
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FilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
TaxaWebService.getTaxonDatasets(TaxonArg<?> taxonArg,
FilterArg<ExpressionExperiment> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sort) |
Retrieves datasets for the given taxon.
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PaginatedResponseDataObject<CompositeSequenceValueObject> |
TaxaWebService.getTaxonGeneProbes(TaxonArg<?> taxonArg,
GeneArg<?> geneArg,
OffsetArg offsetArg,
LimitArg limitArg) |
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PaginatedResponseDataObject<GeneValueObject> |
TaxaWebService.getTaxonGenes(TaxonArg<?> taxonArg,
OffsetArg offsetArg,
LimitArg limitArg) |
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SearchWebService.SearchResultsResponseDataObject |
SearchWebService.search(QueryArg query,
TaxonArg<?> taxonArg,
PlatformArg<?> platformArg,
List<String> resultTypes,
LimitArg limit,
ExcludeArg<SearchResult<?>> excludeArg) |
Search everything subject to taxon and platform constraints.
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QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
AnnotationsWebService.searchDatasets(StringArrayArg query,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sortArg) |
Does a search for datasets containing characteristics matching the given string.
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QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
AnnotationsWebService.searchDatasetsByQueryInPath(StringArrayArg query,
FilterArg<ExpressionExperiment> filterArg,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sortArg) |
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QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
AnnotationsWebService.searchTaxonDatasets(TaxonArg<?> taxonArg,
StringArrayArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sort) |
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QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject> |
AnnotationsWebService.searchTaxonDatasetsByQueryInPath(TaxonArg<?> taxonArg,
StringArrayArg query,
FilterArg<ExpressionExperiment> filter,
OffsetArg offset,
LimitArg limit,
SortArg<ExpressionExperiment> sort) |
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