Uses of Class
ubic.gemma.rest.util.args.LimitArg

Packages that use LimitArg

Package	Description
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of LimitArg in ubic.gemma.rest

Methods in ubic.gemma.rest with parameters of type LimitArg

Modifier and Type	Method	Description
DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	DatasetsWebService.getBlacklistedDatasets(FilterArg<ExpressionExperiment> filterArg, SortArg<ExpressionExperiment> sortArg, OffsetArg offset, LimitArg limit)	Browse blacklisted datasets.
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getBlacklistedPlatforms(FilterArg<ArrayDesign> filter, SortArg<ArrayDesign> sort, OffsetArg offset, LimitArg limit)
ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>>	DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg, OffsetArg offsetArg, LimitArg limitArg)	Retrieves the differential analysis results for the given dataset.
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject>	DatasetsWebService.getDatasets(QueryArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, SortArg<ExpressionExperiment> sortArg)
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.AnnotationWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsAnnotationsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude, LimitArg limitArg, Integer minFrequency, String category, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms, Boolean includePredicates, Boolean includeObjects)
DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	DatasetsWebService.getDatasetsByIds(DatasetArrayArg datasetsArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Retrieves all datasets matching the given identifiers.
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.CategoryWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsCategoriesUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms)
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsDifferentialExpression(DatasetArrayArg datasets, Long diffExSet, Double threshold, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieves the expression levels of genes highly expressed in the given component on given datasets.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene in a given taxon.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene across all datasets.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene and taxon across all datasets.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsExpressionPca(DatasetArrayArg datasets, Integer component, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieves the expression levels of genes highly expressed in the given component on given datasets.
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsPlatformsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit)
ResponseDataObject<List<CoexpressionValueObjectExt>>	GeneWebService.getGeneGeneCoexpression(GeneArg<?> geneArg, GeneArg<?> with, LimitArg limit, Integer stringency)	Retrieves the coexpression of two given genes.
PaginatedResponseDataObject<CompositeSequenceValueObject>	GeneWebService.getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit)	Retrieves the probes (composite sequences) with this gene.
PaginatedResponseDataObject<GeneValueObject>	GeneWebService.getGenes(OffsetArg offsetArg, LimitArg limitArg)
PaginatedResponseDataObject<ExpressionExperimentValueObject>	PlatformsWebService.getPlatformDatasets(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)	Retrieves experiments in the given platform.
FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElement(PlatformArg<?> platformArg, CompositeSequenceArrayArg probesArg, OffsetArg offset, LimitArg limit)	Retrieves composite sequences (elements) of the given platform.
FilteredAndPaginatedResponseDataObject<GeneValueObject>	PlatformsWebService.getPlatformElementGenes(PlatformArg<?> platformArg, CompositeSequenceArg<?> probeArg, OffsetArg offset, LimitArg limit)	Retrieves the genes on the given platform element.
PaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElements(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)	Retrieves the composite sequences (elements) for the given platform.
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getPlatforms(FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort)
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getPlatformsByIds(PlatformArrayArg platformsArg, FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort)	Retrieves all datasets matching the given identifiers.
Object	AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet, Double threshold, OffsetArg offsetArg, LimitArg limitArg, Boolean includeFactorValuesInContrasts, Boolean includeTaxonInGenes, Boolean excludeResults, javax.ws.rs.core.HttpHeaders headers)	Retrieve a AnalysisResultSet given its identifier.
FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject>	AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort)	Retrieve all AnalysisResultSet matching a set of criteria.
FilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	TaxaWebService.getTaxonDatasets(TaxonArg<?> taxonArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Retrieves datasets for the given taxon.
PaginatedResponseDataObject<CompositeSequenceValueObject>	TaxaWebService.getTaxonGeneProbes(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg)
PaginatedResponseDataObject<GeneValueObject>	TaxaWebService.getTaxonGenes(TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg)
javax.ws.rs.core.Response	DatasetsWebService.refreshDatasetsAnnotations(QueryArg query, FilterArg<ExpressionExperiment> filter, ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude, LimitArg limitArg, Integer minFrequency, String category, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms, Boolean includePredicates, Boolean includeObjects)
javax.ws.rs.core.Response	DatasetsWebService.refreshDatasetsPlatforms(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit)
SearchWebService.SearchResultsResponseDataObject	SearchWebService.search(QueryArg query, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg)	Search everything subject to taxon and platform constraints.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasets(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)	Does a search for datasets containing characteristics matching the given string.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasetsByQueryInPath(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasets(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Same as AnnotationsWebService.searchDatasets(StringArrayArg, FilterArg, OffsetArg, LimitArg, SortArg) but also filters by taxon.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasetsByQueryInPath(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)

Uses of LimitArg in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return LimitArg

Modifier and Type	Method	Description
static LimitArg	LimitArg.valueOf(String s)