Uses of Class
ubic.gemma.rest.util.args.OffsetArg

Packages that use OffsetArg

Package	Description
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of OffsetArg in ubic.gemma.rest

Methods in ubic.gemma.rest with parameters of type OffsetArg

Modifier and Type	Method	Description
DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	DatasetsWebService.getBlacklistedDatasets(FilterArg<ExpressionExperiment> filterArg, SortArg<ExpressionExperiment> sortArg, OffsetArg offset, LimitArg limit)	Browse blacklisted datasets.
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getBlacklistedPlatforms(FilterArg<ArrayDesign> filter, SortArg<ArrayDesign> sort, OffsetArg offset, LimitArg limit)
ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>>	DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg, OffsetArg offsetArg, LimitArg limitArg)	Retrieves the differential analysis results for the given dataset.
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject>	DatasetsWebService.getDatasets(QueryArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, SortArg<ExpressionExperiment> sortArg)
DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	DatasetsWebService.getDatasetsByIds(DatasetArrayArg datasetsArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Retrieves all datasets matching the given identifiers.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene in a given taxon.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene across all datasets.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene and taxon across all datasets.
PaginatedResponseDataObject<CompositeSequenceValueObject>	GeneWebService.getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit)	Retrieves the probes (composite sequences) with this gene.
PaginatedResponseDataObject<GeneValueObject>	GeneWebService.getGenes(OffsetArg offsetArg, LimitArg limitArg)
PaginatedResponseDataObject<ExpressionExperimentValueObject>	PlatformsWebService.getPlatformDatasets(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)	Retrieves experiments in the given platform.
FilteredAndPaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElement(PlatformArg<?> platformArg, CompositeSequenceArrayArg probesArg, OffsetArg offset, LimitArg limit)	Retrieves composite sequences (elements) of the given platform.
FilteredAndPaginatedResponseDataObject<GeneValueObject>	PlatformsWebService.getPlatformElementGenes(PlatformArg<?> platformArg, CompositeSequenceArg<?> probeArg, OffsetArg offset, LimitArg limit)	Retrieves the genes on the given platform element.
PaginatedResponseDataObject<CompositeSequenceValueObject>	PlatformsWebService.getPlatformElements(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit)	Retrieves the composite sequences (elements) for the given platform.
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getPlatforms(FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort)
FilteredAndPaginatedResponseDataObject<ArrayDesignValueObject>	PlatformsWebService.getPlatformsByIds(PlatformArrayArg platformsArg, FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort)	Retrieves all datasets matching the given identifiers.
Object	AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet, Double threshold, OffsetArg offsetArg, LimitArg limitArg, Boolean includeFactorValuesInContrasts, Boolean includeTaxonInGenes, Boolean excludeResults, javax.ws.rs.core.HttpHeaders headers)	Retrieve a AnalysisResultSet given its identifier.
FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject>	AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort)	Retrieve all AnalysisResultSet matching a set of criteria.
FilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	TaxaWebService.getTaxonDatasets(TaxonArg<?> taxonArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Retrieves datasets for the given taxon.
PaginatedResponseDataObject<CompositeSequenceValueObject>	TaxaWebService.getTaxonGeneProbes(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg)
PaginatedResponseDataObject<GeneValueObject>	TaxaWebService.getTaxonGenes(TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg)
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasets(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)	Does a search for datasets containing characteristics matching the given string.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasetsByQueryInPath(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasets(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Same as AnnotationsWebService.searchDatasets(StringArrayArg, FilterArg, OffsetArg, LimitArg, SortArg) but also filters by taxon.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasetsByQueryInPath(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)

Uses of OffsetArg in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return OffsetArg

Modifier and Type	Method	Description
static OffsetArg	OffsetArg.valueOf(String s)