Uses of Class
ubic.gemma.rest.util.args.OffsetArg

Packages that use OffsetArg

Package	Description
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of OffsetArg in ubic.gemma.rest

Methods in ubic.gemma.rest with parameters of type OffsetArg

Modifier and Type	Method	Description
Object	DatasetsWebService.getBlacklistedDatasets(FilterArg<ExpressionExperiment> filterArg, SortArg<ExpressionExperiment> sortArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg)	Browse blacklisted datasets.
Object	PlatformsWebService.getBlacklistedPlatforms(FilterArg<ArrayDesign> filter, SortArg<ArrayDesign> sort, OffsetArg offset, LimitArg limit, CursorArg cursorArg)
ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>>	DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg, OffsetArg offsetArg, LimitArg limitArg, boolean includeAssays)	Retrieves the differential analysis results for the given dataset.
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject>	DatasetsWebService.getDatasets(QueryArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, SortArg<ExpressionExperiment> sortArg)
Object	DatasetsWebService.getDatasetsByIds(DatasetArrayArg datasetsArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort, CursorArg cursorArg)	Retrieves all datasets matching the given identifiers.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, jakarta.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, jakarta.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene in a given taxon.
Object	DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, CursorArg cursorArg, Boolean precise)	Retrieve the expression levels of a given gene across all datasets.
Object	DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, CursorArg cursorArg, Boolean precise)	Retrieve the expression levels of a given gene and taxon across all datasets.
PaginatedResponseDataObject<ExpressionExperimentSetValueObject>	ExperimentSetsWebService.getExperimentSets(boolean mine, String query, boolean includeMembers, OffsetArg offsetArg, LimitArg limitArg)
Object	GeneWebService.getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg, boolean summary)	Retrieves the probes (composite sequences) with this gene.
Object	GeneWebService.getGenes(OffsetArg offsetArg, LimitArg limitArg, CursorArg cursorArg)
PaginatedResponseDataObject<GeneValueObject>	GoTermsWebService.getGenesByGoTerm(String termUri, TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg, boolean propagate, int maxTerms)	Reverse lookup: genes annotated with the given GO term.
PaginatedResponseDataObject<GroupsWebService.GroupSummaryValueObject>	GroupsWebService.getGroups(String query, OffsetArg offsetArg, LimitArg limitArg)	List groups (paginated; offset/limit).
Object	PlatformsWebService.getPlatformDatasets(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg)	Retrieves experiments in the given platform.
Object	PlatformsWebService.getPlatformElement(PlatformArg<?> platformArg, CompositeSequenceArrayArg probesArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg, boolean withSequence, boolean withGenes)	Retrieves composite sequences (elements) of the given platform.
Object	PlatformsWebService.getPlatformElementGenes(PlatformArg<?> platformArg, CompositeSequenceArg<?> probeArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg)	Retrieves the genes on the given platform element.
Object	PlatformsWebService.getPlatformElements(PlatformArg<?> platformArg, OffsetArg offset, LimitArg limit, CursorArg cursorArg, boolean withSequence, boolean withGenes, QueryArg geneQuery, FilterArg<CompositeSequence> filter)	Retrieves the composite sequences (elements) for the given platform.
Object	PlatformsWebService.getPlatforms(FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort, CursorArg cursorArg, boolean withGeneCounts)
Object	PlatformsWebService.getPlatformsByIds(PlatformArrayArg platformsArg, FilterArg<ArrayDesign> filter, OffsetArg offset, LimitArg limit, SortArg<ArrayDesign> sort, CursorArg cursorArg, boolean withGeneCounts)	Retrieves all datasets matching the given identifiers.
Object	AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet, Double threshold, OffsetArg offsetArg, LimitArg limitArg, Boolean includeFactorValuesInContrasts, Boolean includeTaxonInGenes, Boolean excludeResults, jakarta.ws.rs.core.HttpHeaders headers)	Retrieve a AnalysisResultSet given its identifier.
Object	AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort, CursorArg cursorArg)	Retrieve all AnalysisResultSet matching a set of criteria.
PaginatedResponseDataObject<DatasetsWebService.StaleDatasetValueObject>	DatasetsWebService.getStaleDatasets(OffsetArg offset, LimitArg limit)	The datasets that owe pipeline work: every dataset with at least one stale step, and which steps those are.
Object	TaxaWebService.getTaxonDatasets(TaxonArg<?> taxonArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort, CursorArg cursorArg)	Retrieves datasets for the given taxon.
Object	TaxaWebService.getTaxonGeneProbes(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg, CursorArg cursorArg)
Object	TaxaWebService.getTaxonGenes(TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg, CursorArg cursorArg)
Object	TicketsWebService.getTickets(boolean openOnly, Long assigneeId, TicketPriority priority, TicketType type, TicketState state, TicketTargetType targetType, Date updatedSince, OffsetArg offsetArg, LimitArg limitArg, CursorArg cursorArg)	List tickets with optional filters and offset/limit or cursor pagination.
PaginatedResponseDataObject<WorkflowWebService.WorkflowQueueEntryResponse>	WorkflowWebService.getWorkflowQueue(String stateName, String datasetType, String datasetTypeLegacy, String assignee, Date since, OffsetArg offsetArg, LimitArg limitArg)	Curator worklist: datasets currently in a given workflow state.
PaginatedResponseDataObject<AnnotationSetsWebService.AnnotationSetSummaryResponse>	AnnotationSetsWebService.listAnnotationSetsAcross(String role, String source, String createdBy, String kind, String status, String datasetIds, OffsetArg offsetArg, LimitArg limitArg, String sort)	Cross-experiment list of annotation sets, paginated.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasets(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)	Does a search for datasets containing characteristics matching the given string.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchDatasetsByQueryInPath(StringArrayArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sortArg)
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasets(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)	Same as AnnotationsWebService.searchDatasets(StringArrayArg, FilterArg, OffsetArg, LimitArg, SortArg) but also filters by taxon.
QueriedAndFilteredAndPaginatedResponseDataObject<ExpressionExperimentValueObject>	AnnotationsWebService.searchTaxonDatasetsByQueryInPath(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort)

Uses of OffsetArg in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return OffsetArg

Modifier and Type	Method	Description
static OffsetArg	OffsetArg.valueOf(String s)