Uses of Interface
ubic.gemma.core.loader.util.fetcher.Fetcher

Packages that use Fetcher

Package	Description
ubic.gemma.core.loader.expression.arrayExpress
ubic.gemma.core.loader.expression.geo
ubic.gemma.core.loader.expression.geo.fetcher
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.genome.gene.ncbi.homology
ubic.gemma.core.loader.genome.taxon
ubic.gemma.core.loader.util.fetcher

Uses of Fetcher in ubic.gemma.core.loader.expression.arrayExpress

Classes in ubic.gemma.core.loader.expression.arrayExpress that implement Fetcher

Modifier and Type	Class	Description
class	DataFileFetcher	ArrayExpress stores files in an FTP site as tarred-gzipped archives.
class	SDRFFetcher	Fetch the SRDF file

Uses of Fetcher in ubic.gemma.core.loader.expression.geo

Constructors in ubic.gemma.core.loader.expression.geo with parameters of type Fetcher

Modifier	Constructor	Description
protected	GeoDomainObjectGenerator(DatasetFetcher datasetFetcher, SeriesFetcher seriesFetcher, Fetcher platformFetcher)

Uses of Fetcher in ubic.gemma.core.loader.expression.geo.fetcher

Classes in ubic.gemma.core.loader.expression.geo.fetcher that implement Fetcher

Modifier and Type	Class	Description
class	DatasetFetcher	Retrieve GEO GDS files from the NCBI FTP server.
class	GeoFetcher
class	LocalDatasetFetcher	Used for testing, but might have other uses, to fetch GEO data from local files instead of the GEO website.
class	LocalSeriesFetcher	A fetcher that only looks locally for "family" files (GPLXXX_family, GSEXXX_family).
class	PlatformFetcher	Fetch GEO "GPLXXX_family.soft.gz" files
class	RawDataFetcher	Retrieve and unpack the raw data files for GEO series.
class	SeriesFetcher

Uses of Fetcher in ubic.gemma.core.loader.genome.gene.ncbi

Classes in ubic.gemma.core.loader.genome.gene.ncbi that implement Fetcher

Modifier and Type	Class	Description
class	NCBIGeneFileFetcher	Class to download files for NCBI gene.

Uses of Fetcher in ubic.gemma.core.loader.genome.gene.ncbi.homology

Classes in ubic.gemma.core.loader.genome.gene.ncbi.homology that implement Fetcher

Modifier and Type	Class	Description
class	HomologeneFetcher	Grabs urls like ftp:///ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data

Uses of Fetcher in ubic.gemma.core.loader.genome.taxon

Classes in ubic.gemma.core.loader.genome.taxon that implement Fetcher

Modifier and Type	Class	Description
class	TaxonFetcher	Taxon information from NCBI comes as a tar.gz archive; only the names.dmp file is of interest.

Uses of Fetcher in ubic.gemma.core.loader.util.fetcher

Subinterfaces of Fetcher in ubic.gemma.core.loader.util.fetcher

Modifier and Type	Interface	Description
interface	ArchiveFetcher	Interface defining a class that downloads archives and unpacks them.

Classes in ubic.gemma.core.loader.util.fetcher that implement Fetcher

Modifier and Type	Class	Description
class	AbstractFetcher
class	FtpArchiveFetcher	Fetcher that can fetch archives (e.g., tar.gz) and unpack them.
class	FtpFetcher	Download files by FTP.
class	HttpFetcher	A generic class for fetching files via HTTP and writing them to a local file system.