Uses of Class
ubic.gemma.core.loader.util.parser.BasicLineMapParser

Packages that use BasicLineMapParser

Package	Description
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.genome
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.genome.taxon
ubic.gemma.core.loader.util.biomart
ubic.gemma.core.loader.util.parser

Uses of BasicLineMapParser in ubic.gemma.core.loader.expression.arrayDesign

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.expression.arrayDesign

Modifier and Type	Class	Description
class	AffyProbeReader	Reads Affymetrix Probe files, including exon arrays.
class	IlluminaProbeReader	Parse an Illumina "manifest.txt" file (tab-delimited).

Uses of BasicLineMapParser in ubic.gemma.core.loader.genome

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome

Modifier and Type	Class	Description
class	ProbeSequenceParser	Parse probes from a tabular file.

Uses of BasicLineMapParser in ubic.gemma.core.loader.genome.gene.ncbi

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome.gene.ncbi

Modifier and Type	Class	Description
class	NcbiGeneEnsemblFileParser
class	NcbiGeneHistoryParser	Parse the NCBI "gene_history" file.
class	NcbiGeneInfoParser	Class to parse the gene_info file from NCBI Gene.

Uses of BasicLineMapParser in ubic.gemma.core.loader.genome.taxon

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome.taxon

Modifier and Type	Class	Description
class	TaxonParser	Parse the "names.dmp" file from NCBI, ftp://ftp.ncbi.nih.gov/pub/taxonomy/.

Uses of BasicLineMapParser in ubic.gemma.core.loader.util.biomart

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.util.biomart

Modifier and Type	Class	Description
class	BiomartEnsembleNcbiParser	Parser for BioMart file.

Uses of BasicLineMapParser in ubic.gemma.core.loader.util.parser

Subclasses of BasicLineMapParser in ubic.gemma.core.loader.util.parser

Modifier and Type	Class	Description
class	LineMapParser<K,T>	The difference between this class and BasicLineMapParser is more flexibility in how keys are provided.