Uses of Class
ubic.gemma.core.loader.util.parser.BasicLineMapParser
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Uses of BasicLineMapParser in ubic.gemma.core.loader.expression.arrayDesign
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.expression.arrayDesign Modifier and Type Class Description class
AffyProbeReader
Reads Affymetrix Probe files, including exon arrays.class
IlluminaProbeReader
Parse an Illumina "manifest.txt" file (tab-delimited). -
Uses of BasicLineMapParser in ubic.gemma.core.loader.genome
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome Modifier and Type Class Description class
ProbeSequenceParser
Parse probes from a tabular file. -
Uses of BasicLineMapParser in ubic.gemma.core.loader.genome.gene.ncbi
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome.gene.ncbi Modifier and Type Class Description class
NcbiGeneEnsemblFileParser
class
NcbiGeneHistoryParser
Parse the NCBI "gene_history" file.class
NcbiGeneInfoParser
Class to parse the gene_info file from NCBI Gene. -
Uses of BasicLineMapParser in ubic.gemma.core.loader.genome.taxon
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.genome.taxon Modifier and Type Class Description class
TaxonParser
Parse the "names.dmp" file from NCBI, ftp://ftp.ncbi.nih.gov/pub/taxonomy/. -
Uses of BasicLineMapParser in ubic.gemma.core.loader.util.biomart
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.util.biomart Modifier and Type Class Description class
BiomartEnsembleNcbiParser
Parser for BioMart file. -
Uses of BasicLineMapParser in ubic.gemma.core.loader.util.parser
Subclasses of BasicLineMapParser in ubic.gemma.core.loader.util.parser Modifier and Type Class Description class
LineMapParser<K,T>
The difference between this class and BasicLineMapParser is more flexibility in how keys are provided.
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