Uses of Class
ubic.gemma.model.analysis.Analysis

Packages that use Analysis

Package	Description
ubic.gemma.model.analysis
ubic.gemma.model.analysis.expression
ubic.gemma.model.analysis.expression.coexpression
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.analysis.expression.pca
ubic.gemma.model.association
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service.analysis

Uses of Analysis in ubic.gemma.model.analysis

Classes in ubic.gemma.model.analysis with type parameters of type Analysis

Modifier and Type	Class	Description
class	AnalysisValueObject<T extends Analysis>

Subclasses of Analysis in ubic.gemma.model.analysis

Modifier and Type	Class	Description
class	SingleExperimentAnalysis<T extends BioAssaySet>	An analysis of a single experiment or subset.

Uses of Analysis in ubic.gemma.model.analysis.expression

Subclasses of Analysis in ubic.gemma.model.analysis.expression

Modifier and Type	Class	Description
class	ExpressionAnalysis	An analysis of one or more ExpressionExperiments

Uses of Analysis in ubic.gemma.model.analysis.expression.coexpression

Subclasses of Analysis in ubic.gemma.model.analysis.expression.coexpression

Modifier and Type	Class	Description
class	CoexpressionAnalysis	A coexpression analysis of one experiment.
class	SampleCoexpressionAnalysis	The 'analysis' in the name is a bit of a stretch here, as this object servers purely as an aggregator of all the sample coexpression matrices.

Uses of Analysis in ubic.gemma.model.analysis.expression.diff

Subclasses of Analysis in ubic.gemma.model.analysis.expression.diff

Modifier and Type	Class	Description
class	DifferentialExpressionAnalysis	An analysis of changes in expression levels across experimental conditions
class	GeneDifferentialExpressionMetaAnalysis	Represents an analysis that combines the results of other analyses of differential expression.

Uses of Analysis in ubic.gemma.model.analysis.expression.pca

Subclasses of Analysis in ubic.gemma.model.analysis.expression.pca

Modifier and Type	Class	Description
class	PrincipalComponentAnalysis

Uses of Analysis in ubic.gemma.model.association

Methods in ubic.gemma.model.association that return Analysis

Modifier and Type	Method	Description
Analysis	BioSequence2GeneProduct.getSourceAnalysis()

Methods in ubic.gemma.model.association with parameters of type Analysis

Modifier and Type	Method	Description
void	BioSequence2GeneProduct.setSourceAnalysis(Analysis sourceAnalysis)

Uses of Analysis in ubic.gemma.model.expression.bioAssayData

Subclasses of Analysis in ubic.gemma.model.expression.bioAssayData

Modifier and Type	Class	Description
class	CellTypeAssignment	Represents a cell type assignment where cells from a given dataset are assigned cell types.

Uses of Analysis in ubic.gemma.persistence.service.analysis

Classes in ubic.gemma.persistence.service.analysis with type parameters of type Analysis

Modifier and Type	Interface	Description
interface	AnalysisDao<T extends Analysis>
interface	AnalysisService<T extends Analysis>	Provides basic services for dealing with analyses