Uses of Class
ubic.gemma.core.util.test.BaseDatabaseTest5

Packages that use BaseDatabaseTest5

Package	Description
ubic.gemma.core.loader.expression.singleCell
ubic.gemma.core.ontology.providers.chebi
ubic.gemma.core.security.authentication
ubic.gemma.core.security.authorization.acl
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.blacklist
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.common.quantitationtype
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.maintenance
ubic.gemma.persistence.util

Uses of BaseDatabaseTest5 in ubic.gemma.core.loader.expression.singleCell

Subclasses of BaseDatabaseTest5 in ubic.gemma.core.loader.expression.singleCell

Modifier and Type	Class	Description
class	MexSingleCellDataLoaderPersistenceTest	Load and persist single-cell data stored in the MEX format.

Uses of BaseDatabaseTest5 in ubic.gemma.core.ontology.providers.chebi

Subclasses of BaseDatabaseTest5 in ubic.gemma.core.ontology.providers.chebi

Modifier and Type	Class	Description
class	ChebiSeedResolverSlotsTest	The CHEBI slim is only as good as its seed set, and the seed set used to be built from Characteristic.valueUri alone.

Uses of BaseDatabaseTest5 in ubic.gemma.core.security.authentication

Subclasses of BaseDatabaseTest5 in ubic.gemma.core.security.authentication

Modifier and Type	Class	Description
class	UserManagerTest

Uses of BaseDatabaseTest5 in ubic.gemma.core.security.authorization.acl

Subclasses of BaseDatabaseTest5 in ubic.gemma.core.security.authorization.acl

Modifier and Type	Class	Description
class	AclLinterParentInheritanceTest	Coverage for the entries_inheriting half of AclLinterServiceImpl.setParentAcl.
class	AclLinterServiceTest
class	ParentIdentityRetrievalStrategyTest	Phase 3 gsec HQL deprecation: regression coverage for ParentIdentityRetrievalStrategyImpl after its HQL select against AclObjectIdentity was replaced with raw SQL against acl_object_identity JOIN acl_class.

Uses of BaseDatabaseTest5 in ubic.gemma.model.expression.bioAssayData

Subclasses of BaseDatabaseTest5 in ubic.gemma.model.expression.bioAssayData

Modifier and Type	Class	Description
class	RawExpressionDataVectorTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service

Modifier and Type	Class	Description
class	AbstractServiceTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression

Modifier and Type	Class	Description
class	ExpressionExperimentSetDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression.diff

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Class	Description
class	AnalysisResultSetCacheStalenessTest	Regression guard for the Hibernate-6 cache-staleness shape flagged as HB6 cascade audit finding #6 (HIBERNATE6_CASCADE_AUDIT.md): the AnalysisResultSet + DifferentialExpressionAnalysisResult HBM mapping has the same mutable="false" parent + child collection + <cache usage="read-only"/> shape that caused the AuditTrail / AuditEvent stale-empty-bag bug (fixed in ab8b4c443c).
class	DifferentialExpressionAnalysisDaoTest
class	DifferentialExpressionResultDaoTest
class	ExpressionAnalysisResultSetDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression.pca

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.analysis.expression.pca

Modifier and Type	Class	Description
class	PrincipalComponentAnalysisDaoImplTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.blacklist

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.blacklist

Modifier and Type	Class	Description
class	BlacklistedEntityDaoImplTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.auditAndSecurity

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Class	Description
class	AuditEventDaoTest
class	CuratableDaoTest
class	UserDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.description

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.description

Modifier and Type	Class	Description
class	AnnotationRelationDaoTest	Reads over ANNOTATION_RELATION.
class	CharacteristicDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.quantitationtype

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.common.quantitationtype

Modifier and Type	Class	Description
class	QuantitationTypeDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.arrayDesign

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.arrayDesign

Modifier and Type	Class	Description
class	ArrayDesignDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.bioAssayData

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.bioAssayData

Modifier and Type	Class	Description
class	BioAssayDimensionCacheStalenessTest	HB6 cascade audit #10 regression guard: BioAssayDimension HBM (Pattern C — mutable="false" class + child list + cache directive).
class	CachedProcessedExpressionDataVectorServiceTest
class	ProcessedExpressionDataVectorDaoTest
class	RawAndProcessedExpressionDataVectorDaoTest
class	RawExpressionDataVectorDaoTest
class	SingleCellDimensionCacheStalenessTest	HB6 cascade audit #9 regression guard: SingleCellDimension family (Pattern C — mutable="false" class + child collection + cache directive).

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.biomaterial

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.biomaterial

Modifier and Type	Class	Description
class	BioMaterialDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.designElement

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.designElement

Modifier and Type	Class	Description
class	CompositeSequenceDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.experiment

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Class	Description
class	ExperimentalFactorServiceTest
class	ExpressionExperimentDaoCursorTest	Integration tests for the keyset (cursor) pagination DAO mechanism on ExpressionExperimentDao.
class	ExpressionExperimentDaoTest
class	ExpressionExperimentServiceDetachedEntityTest	ExpressionExperimentService.isSingleCell(ExpressionExperiment) must not require its argument to be attached to a session.
class	ExpressionExperimentSubSetDaoTest
class	FactorValueDaoTest
class	FactorValueServiceTest
class	PreboardedExperimentMappingTest	Regression guard for the PreboardedExperiment discriminator mapping added in commit 44bf890061.
class	ReplaceAllRawDataVectorsQtCollisionTest	Fast H2-backed regression guard for the QT entity-identity collision that DataUpdater.addCountData re-run path tripped (commit ef838e08fc).
class	SingleCellExpressionExperimentServiceTest	Tests covering integration of single-cell.
class	SingleCellStreamingAddTest	Tests for the streaming overload of SingleCellExpressionExperimentService.addSingleCellDataVectors(ExpressionExperiment, QuantitationType, SingleCellDimension, Stream, String, boolean, boolean).
class	StatementTagPersistenceTest	A statement-shaped experiment tag must survive the round trip as a Statement.

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.genome

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.genome

Modifier and Type	Class	Description
class	GeneDaoTest

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.service.maintenance

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.service.maintenance

Modifier and Type	Class	Description
class	AnnotationRelationHarvestTest	The CURATED harvest: EE2C rows that already carry a predicate and an object become queryable relations.

Uses of BaseDatabaseTest5 in ubic.gemma.persistence.util

Subclasses of BaseDatabaseTest5 in ubic.gemma.persistence.util

Modifier and Type	Class	Description
class	AclSemanticsContractTest	Contract harness for the planned rewrite of AclQueryUtils.formAclRestrictionClause(String) (and its sibling formNativeAclRestrictionClause) from the current row-multiplying JOIN strategy to a correlated EXISTS subquery.
class	HibernateSqmFragileShapesIT	HB6 SQM-translator regression guard.
class	HqlSmokeIT	Mass parse-only smoke test for every statically-extractable HQL string in gemma-core/src/main/java.