Uses of Class
ubic.gemma.core.analysis.singleCell.aggregate.SingleCellExperimentSubSetsCreationConfig

Packages that use SingleCellExperimentSubSetsCreationConfig

Package	Description
ubic.gemma.core.analysis.singleCell.aggregate	This package contains classes for subsetting and aggregating single-cell data.

Uses of SingleCellExperimentSubSetsCreationConfig in ubic.gemma.core.analysis.singleCell.aggregate

Methods in ubic.gemma.core.analysis.singleCell.aggregate that return SingleCellExperimentSubSetsCreationConfig

Modifier and Type	Method	Description
SingleCellExperimentSubSetsCreationConfig	SingleCellExperimentSubSetsCreationConfig.SingleCellExperimentSubSetsCreationConfigBuilder.build()

Methods in ubic.gemma.core.analysis.singleCell.aggregate with parameters of type SingleCellExperimentSubSetsCreationConfig

Modifier and Type	Method	Description
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSubSetService.createSubSets(ExpressionExperiment ee, SingleCellDimension scd, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic,FactorValue> cellTypeMapping, SingleCellExperimentSubSetsCreationConfig config)	Subset biomaterials and bioassays by the given CellLevelCharacteristics.
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSubSetServiceImpl.createSubSets(ExpressionExperiment ee, SingleCellDimension scd, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic,FactorValue> mappedCellTypeFactors, SingleCellExperimentSubSetsCreationConfig config)
QuantitationType	SingleCellExpressionExperimentCreateSubSetsAndAggregateService.createSubSetsAndAggregate(ExpressionExperiment expressionExperiment, QuantitationType scQt, CellLevelCharacteristics cta, ExperimentalFactor cellTypeFactor, Map<Characteristic,FactorValue> c2f, SingleCellExperimentSubSetsCreationConfig singleCellExperimentSubSetsCreationConfig, SingleCellAggregationConfig config)	Create subsets and aggregate by any cell-level characteristics.
QuantitationType	SingleCellExpressionExperimentCreateSubSetsAndAggregateServiceImpl.createSubSetsAndAggregate(ExpressionExperiment expressionExperiment, QuantitationType scQt, CellLevelCharacteristics clc, ExperimentalFactor cellTypeFactor, Map<Characteristic,FactorValue> c2f, SingleCellExperimentSubSetsCreationConfig singleCellExperimentSubSetsCreationConfig, SingleCellAggregationConfig config)
QuantitationType	SingleCellExpressionExperimentCreateSubSetsAndAggregateService.createSubSetsAndAggregateByCellType(ExpressionExperiment expressionExperiment, SingleCellExperimentSubSetsCreationConfig singleCellExperimentSubSetsCreationConfig, SingleCellAggregationConfig config)	Create subsets and aggregate by cell type.
QuantitationType	SingleCellExpressionExperimentCreateSubSetsAndAggregateServiceImpl.createSubSetsAndAggregateByCellType(ExpressionExperiment expressionExperiment, SingleCellExperimentSubSetsCreationConfig singleCellExperimentSubSetsCreationConfig, SingleCellAggregationConfig config)
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSubSetService.createSubSetsByCellType(ExpressionExperiment ee, SingleCellExperimentSubSetsCreationConfig config)	Subset a single-cell dataset by preferred cell type assignment the cell type factor and the
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSubSetServiceImpl.createSubSetsByCellType(ExpressionExperiment ee, SingleCellExperimentSubSetsCreationConfig config)