Uses of Class
ubic.gemma.core.search.SearchResult

Packages that use SearchResult

Package	Description
ubic.gemma.core.search
ubic.gemma.core.search.source
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.search

Uses of SearchResult in ubic.gemma.core.search

Methods in ubic.gemma.core.search that return SearchResult

Modifier and Type	Method	Description
static <T extends Identifiable> SearchResult<T>	SearchResult.from(Class<? extends Identifiable> resultType, long entityId, double score, Map<String,String> highlights, Object source)	Create a new provisional search result with a result type and ID.
static <T extends Identifiable> SearchResult<T>	SearchResult.from(Class<? extends Identifiable> resultType, T entity, double score, Map<String,String> highlights, Object source)	Create a search result from a given identifiable entity.
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchService.loadValueObject(SearchResult<T> searchResult)	Convert a SearchResult to its VO flavour.
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchServiceImpl.loadValueObject(SearchResult<T> searchResult)
SearchResult<T>	SearchResult.withHighlights(Map<String,String> highlights)	Copy this search result with the given highlights.
<S extends Identifiable> SearchResult<S>	SearchResult.withResultObject(S resultObject)	Create a search result from an existing one, replacing the result object with the target one.

Methods in ubic.gemma.core.search that return types with arguments of type SearchResult

Modifier and Type	Method	Description
<T extends Identifiable> List<SearchResult<T>>	SearchService.SearchResultMap.getByResultObjectType(Class<T> clazz)	Obtain results where the result object is of a given type, regardless of the result type.
List<SearchResult<?>>	SearchService.SearchResultMap.getByResultType(Class<? extends Identifiable> searchResultType)
Iterator<SearchResult<T>>	SearchResultSet.iterator()
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchService.loadValueObjects(Collection<SearchResult<?>> searchResults)	Convert a collection of SearchResult to their VO flavours.
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchServiceImpl.loadValueObjects(Collection<SearchResult<?>> searchResults)
default Collection<SearchResult<ArrayDesign>>	SearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
default Collection<SearchResult<BibliographicReference>>	SearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
default Collection<SearchResult<BioSequence>>	SearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
default Collection<SearchResult<?>>	SearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated. use SearchSource.searchBioSequence(SearchSettings, SearchContext) (SearchSettings)} instead
default Collection<SearchResult<BlacklistedEntity>>	SearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
default Collection<SearchResult<CompositeSequence>>	SearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
default Collection<SearchResult<?>>	SearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Deprecated. use SearchSource.searchCompositeSequence(SearchSettings, SearchContext) instead
default Collection<SearchResult<ExpressionExperimentSet>>	SearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
default Collection<SearchResult<ExpressionExperiment>>	SearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
default Collection<SearchResult<Gene>>	SearchSource.searchGene(SearchSettings settings, SearchContext context)
default Collection<SearchResult<GeneSet>>	SearchSource.searchGeneSet(SearchSettings settings, SearchContext context)
List<SearchResult<?>>	SearchService.SearchResultMap.toList()

Methods in ubic.gemma.core.search with parameters of type SearchResult

Modifier and Type	Method	Description
boolean	SearchResultSet.add(SearchResult<T> t)
int	SearchResult.compareTo(SearchResult<?> o)
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchService.loadValueObject(SearchResult<T> searchResult)	Convert a SearchResult to its VO flavour.
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchServiceImpl.loadValueObject(SearchResult<T> searchResult)

Method parameters in ubic.gemma.core.search with type arguments of type SearchResult

Modifier and Type	Method	Description
static <T extends Identifiable> List<SearchResultDisplayObject>	SearchResultDisplayObject.convertSearchResults2SearchResultDisplayObjects(List<SearchResult<T>> results)	Creates a collection of SearchResultDisplayObjects from a collection of objects.
static <T extends Identifiable> boolean	SearchSettingsUtils.isFilled(Collection<SearchResult<T>> results, SearchSettings settings)	Check if a collection of search results is already filled.
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchService.loadValueObjects(Collection<SearchResult<?>> searchResults)	Convert a collection of SearchResult to their VO flavours.
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchServiceImpl.loadValueObjects(Collection<SearchResult<?>> searchResults)
default Collection<SearchResult<?>>	SearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated. use SearchSource.searchBioSequence(SearchSettings, SearchContext) (SearchSettings)} instead

Uses of SearchResult in ubic.gemma.core.search.source

Methods in ubic.gemma.core.search.source that return types with arguments of type SearchResult

Modifier and Type	Method	Description
Collection<SearchResult<ArrayDesign>>	CompositeSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
Collection<SearchResult<ArrayDesign>>	DatabaseSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)	A general search for array designs.
Collection<SearchResult<ArrayDesign>>	HibernateSearchSource.searchArrayDesign(SearchSettings settings, SearchContext context)
Collection<SearchResult<BibliographicReference>>	CompositeSearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
Collection<SearchResult<BibliographicReference>>	HibernateSearchSource.searchBibliographicReference(SearchSettings settings, SearchContext context)
Collection<SearchResult<BioSequence>>	CompositeSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<BioSequence>>	DatabaseSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)	A database search for biosequences.
Collection<SearchResult<BioSequence>>	HibernateSearchSource.searchBioSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<?>>	CompositeSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated.
Collection<SearchResult<?>>	DatabaseSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)
Collection<SearchResult<BlacklistedEntity>>	CompositeSearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
Collection<SearchResult<BlacklistedEntity>>	DatabaseSearchSource.searchBlacklistedEntities(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	CompositeSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	DatabaseSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<CompositeSequence>>	HibernateSearchSource.searchCompositeSequence(SearchSettings settings, SearchContext context)
Collection<SearchResult<?>>	CompositeSearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Deprecated.
Collection<SearchResult<?>>	DatabaseSearchSource.searchCompositeSequenceAndGene(SearchSettings settings, SearchContext context)	Search the DB for composite sequences and the genes that are matched to them.
Collection<SearchResult<ExpressionExperimentSet>>	CompositeSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperimentSet>>	DatabaseSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperimentSet>>	HibernateSearchSource.searchExperimentSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	CompositeSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	DatabaseSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)	Does search on exact string by: id, name and short name.
Collection<SearchResult<ExpressionExperiment>>	HibernateSearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)
Collection<SearchResult<ExpressionExperiment>>	OntologySearchSource.searchExpressionExperiment(SearchSettings settings, SearchContext context)	Search via characteristics i.e. ontology terms.
Collection<SearchResult<Gene>>	CompositeSearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<Gene>>	DatabaseSearchSource.searchGene(SearchSettings settings, SearchContext context)	Search the DB for genes that exactly match the given search string searches geneProducts, gene and bioSequence tables
Collection<SearchResult<Gene>>	GeneOntologySearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<Gene>>	HibernateSearchSource.searchGene(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	CompositeSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	DatabaseSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)
Collection<SearchResult<GeneSet>>	HibernateSearchSource.searchGeneSet(SearchSettings settings, SearchContext context)

Method parameters in ubic.gemma.core.search.source with type arguments of type SearchResult

Modifier and Type	Method	Description
Collection<SearchResult<?>>	CompositeSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)	Deprecated.
Collection<SearchResult<?>>	DatabaseSearchSource.searchBioSequenceAndGene(SearchSettings settings, SearchContext context, Collection<SearchResult<Gene>> previousGeneSearchResults)

Uses of SearchResult in ubic.gemma.rest

Method parameters in ubic.gemma.rest with type arguments of type SearchResult

Modifier and Type	Method	Description
SearchWebService.SearchResultsResponseDataObject	SearchWebService.search(QueryArg query, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg)	Search everything subject to taxon and platform constraints.

Constructors in ubic.gemma.rest with parameters of type SearchResult

Modifier	Constructor	Description
	ExpressionExperimentWithSearchResultValueObject(ExpressionExperimentValueObject vo, SearchResult<ExpressionExperiment> result)
	SearchResultValueObject(SearchResult<T> searchResult)

Uses of SearchResult in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return types with arguments of type SearchResult

Modifier and Type	Method	Description
List<SearchResult<ExpressionExperiment>>	DatasetArgService.getResultsForSearchQuery(QueryArg query, Highlighter highlighter, Collection<Throwable> queryWarnings)	Obtain the search results for a given query and highlighter.

Uses of SearchResult in ubic.gemma.web.controller.search

Constructors in ubic.gemma.web.controller.search with parameters of type SearchResult

Modifier	Constructor	Description
	SearchResultValueObject(SearchResult<T> result)