Uses of Interface
ubic.gemma.persistence.service.expression.arrayDesign.ArrayDesignService

Packages that use ArrayDesignService

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.analysis.sequence
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest.util.args

Uses of ArrayDesignService in ubic.gemma.apps

Fields in ubic.gemma.apps declared as ArrayDesignService

Modifier and Type	Field	Description
protected ArrayDesignService	ArrayDesignSequenceManipulatingCli.arrayDesignService

Uses of ArrayDesignService in ubic.gemma.core.analysis.sequence

Constructors in ubic.gemma.core.analysis.sequence with parameters of type ArrayDesignService

Modifier	Constructor	Description
	ArrayDesignMapResultServiceImpl(BlatResultReadService blatResultService, BlatAssociationReadService blatAssociationService, ArrayDesignService arrayDesignService, CompositeSequenceService compositeSequenceService)

Uses of ArrayDesignService in ubic.gemma.core.loader.expression.arrayDesign

Constructors in ubic.gemma.core.loader.expression.arrayDesign with parameters of type ArrayDesignService

Modifier	Constructor	Description
	ArrayDesignMergeServiceImpl(ArrayDesignService arrayDesignService, ArrayDesignReportService arrayDesignReportService, ArrayDesignMergeHelperService mergeServiceHelper)
	ArrayDesignProbeMapperServiceImpl(AnnotationAssociationService annotationAssociationService, ArrayDesignAnnotationService arrayDesignAnnotationService, ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, ProbeMapper probeMapper, BioSequenceService bioSequenceService, BlatResultReadService blatResultService, CompositeSequenceService compositeSequenceService, ExpressionDataFileService expressionDataFileService, GeneProductService geneProductService, GeneService geneService, GenomePersister genomePersister, GoldenPathSequenceAnalysisFactory goldenPathSequenceAnalysisFactory, org.springframework.core.task.TaskExecutor taskExecutor)
	ArrayDesignSequenceAlignmentServiceImpl(ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, BioSequenceService bioSequenceService, GenomePersister genomePersister, GoldenPathQueryFactory goldenPathQueryFactory)
	ArrayDesignSequenceProcessingServiceImpl(ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, BioSequenceService bioSequenceService, ExternalDatabaseService externalDatabaseService, GenomePersister genomePersister, String fastaCmdExe)

Uses of ArrayDesignService in ubic.gemma.core.loader.expression.cellxgene

Constructors in ubic.gemma.core.loader.expression.cellxgene with parameters of type ArrayDesignService

Modifier	Constructor	Description
	CellXGeneDataLoaderServiceImpl(Persister persister, ArrayDesignService arrayDesignService, ExpressionExperimentService expressionExperimentService, SingleCellExpressionExperimentService singleCellExpressionExperimentService, ExternalDatabaseService externalDatabaseService, TaxonReadService taxonReadService, SingleCellDataTransformationFactory singleCellDataTransformationFactory, org.springframework.transaction.PlatformTransactionManager transactionManager, Path cellXGeneDownloadPath, Path cellXGeneTransposedPath, String ncbiApiKey)

Uses of ArrayDesignService in ubic.gemma.persistence.service.expression.arrayDesign

Classes in ubic.gemma.persistence.service.expression.arrayDesign that implement ArrayDesignService

Modifier and Type	Class	Description
class	ArrayDesignServiceImpl

Uses of ArrayDesignService in ubic.gemma.persistence.service.expression.designElement

Constructors in ubic.gemma.persistence.service.expression.designElement with parameters of type ArrayDesignService

Modifier	Constructor	Description
	CompositeSequenceServiceImpl(CompositeSequenceDao compositeSequenceDao, BioSequenceService bioSequenceService, GeneProductService geneProductService, BlatResultService blatResultService, ArrayDesignService arrayDesignService, CompositeSequenceReadService compositeSequenceReadService)

Uses of ArrayDesignService in ubic.gemma.persistence.service.genome.taxon

Constructors in ubic.gemma.persistence.service.genome.taxon with parameters of type ArrayDesignService

Modifier	Constructor	Description
	TaxonReadServiceImpl(TaxonDao taxonDao, ExpressionExperimentService expressionExperimentService, ArrayDesignService arrayDesignService)

Uses of ArrayDesignService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type ArrayDesignService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)

Uses of ArrayDesignService in ubic.gemma.rest.util.args

Subclasses with type arguments of type ArrayDesignService in ubic.gemma.rest.util.args

Modifier and Type	Class	Description
class	PlatformArg<T>	Mutable argument type base class for dataset (ExpressionExperiment) API.
class	PlatformArgService
class	PlatformArrayArg

Constructors in ubic.gemma.rest.util.args with parameters of type ArrayDesignService

Modifier	Constructor	Description
	DatasetArgService(ExpressionExperimentService service, SearchService searchService, ArrayDesignService adService, BioAssayService baService, OutlierDetectionService outlierDetectionService, PublicationAssociationService publicationAssociationService)
	PlatformArgService(ArrayDesignService service, ExpressionExperimentService eeService, CompositeSequenceService csService, CompositeSequenceArgService csArgService)