Uses of Annotation Type
org.springframework.security.test.context.support.WithMockUser

Packages that use WithMockUser

Package	Description
ubic.gemma.apps
ubic.gemma.core.logging.log4j
ubic.gemma.core.search
ubic.gemma.core.search.source
ubic.gemma.core.security
ubic.gemma.core.security.authorization.acl
ubic.gemma.core.visualization
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.maintenance
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.web.controller.common.auditAndSecurity

Uses of WithMockUser in ubic.gemma.apps

Classes in ubic.gemma.apps with annotations of type WithMockUser

Modifier and Type	Class	Description
class	DifferentialExpressionAnalysisCliTest

Methods in ubic.gemma.apps with annotations of type WithMockUser

Modifier and Type	Method	Description
void	ArrayDesignMergeCliTest.test()
void	ExternalDatabaseUpdaterCliTest.test()
void	FindObsoleteTermsCliTest.test()
void	NCBIGene2GOAssociationLoaderCLITest.test()
void	ProtocolAdderCliTest.test()
void	FactorValueMigratorCLITest.testMigrateFactorValues()	Deprecated.
void	RNASeqDataAddCliTest.testPaired()
void	ExpressionExperimentManipulatingCLITest.testSingleExperimentMode()
void	RNASeqDataAddCliTest.testUnpaired()
void	RNASeqDataAddCliTest.testWhenPairednessIsUnknown()
void	ProtocolAdderCliTest.testWhenProtocolWithNameAlreadyExists()

Uses of WithMockUser in ubic.gemma.core.logging.log4j

Methods in ubic.gemma.core.logging.log4j with annotations of type WithMockUser

Modifier and Type	Method	Description
void	BuildInfoThreadContextPopulatorTest.test()

Uses of WithMockUser in ubic.gemma.core.search

Methods in ubic.gemma.core.search with annotations of type WithMockUser

Modifier and Type	Method	Description
void	SearchServiceTest.searchExpressionExperiment()
void	SearchServiceVoConversionTest.testBlacklistedConversion()
void	SearchServiceVoConversionTest.testConvertArrayDesign()
void	SearchServiceVoConversionTest.testConvertArrayDesignCollection()
void	SearchServiceVoConversionTest.testConvertCompositeSequence()
void	SearchServiceVoConversionTest.testConvertCompositeSequenceCollection()
void	SearchServiceVoConversionTest.testConvertExpressionExperiment()

Uses of WithMockUser in ubic.gemma.core.search.source

Methods in ubic.gemma.core.search.source with annotations of type WithMockUser

Modifier and Type	Method	Description
void	HibernateSearchSourceTest.testSearchExpressionExperiment()
void	HibernateSearchSourceTest.testSearchExpressionExperimentByStatementObject()

Uses of WithMockUser in ubic.gemma.core.security

Methods in ubic.gemma.core.security with annotations of type WithMockUser

Modifier and Type	Method	Description
void	SecurityUtilsTest.testIsAdmin()
void	SecurityUtilsTest.testIsUserLoggedIn()
void	SecurityUtilsTest.testRunAsAdmin()

Uses of WithMockUser in ubic.gemma.core.security.authorization.acl

Methods in ubic.gemma.core.security.authorization.acl with annotations of type WithMockUser

Modifier and Type	Method	Description
void	AclLinterServiceTest.test()

Uses of WithMockUser in ubic.gemma.core.visualization

Methods in ubic.gemma.core.visualization with annotations of type WithMockUser

Modifier and Type	Method	Description
void	ExperimentalDesignVisualizationServiceTest.testOrderBasicExperiment()
void	ExperimentalDesignVisualizationServiceTest.testOrderExperimentSubSet()
void	ExperimentalDesignVisualizationServiceTest.testOrderSingleCellData()

Uses of WithMockUser in ubic.gemma.persistence.service.analysis.expression.diff

Methods in ubic.gemma.persistence.service.analysis.expression.diff with annotations of type WithMockUser

Modifier and Type	Method	Description
void	DifferentialExpressionResultDaoTest.testFindByGene()
void	DifferentialExpressionResultDaoTest.testFindByGeneAndThreshold()
void	ExpressionAnalysisResultSetDaoTest.testLoadAnalysisOnSubset()	This test covers the application of ACLs on the source experiment when a subset analysis is retrieved.

Uses of WithMockUser in ubic.gemma.persistence.service.common.description

Methods in ubic.gemma.persistence.service.common.description with annotations of type WithMockUser

Modifier and Type	Method	Description
void	CharacteristicDaoTest.testFindExperimentsByUris()
void	CharacteristicDaoTest.testFindExperimentsByUrisAsAdmin()
void	CharacteristicDaoTest.testFindExperimentsByUrisAsAnonymous()

Uses of WithMockUser in ubic.gemma.persistence.service.expression.arrayDesign

Methods in ubic.gemma.persistence.service.expression.arrayDesign with annotations of type WithMockUser

Modifier and Type	Method	Description
void	ArrayDesignDaoTest.testCountExpressionExperiments()

Uses of WithMockUser in ubic.gemma.persistence.service.expression.bioAssayData

Methods in ubic.gemma.persistence.service.expression.bioAssayData with annotations of type WithMockUser

Modifier and Type	Method	Description
void	CachedProcessedExpressionDataVectorServiceTest.testGetVectors()
void	CachedProcessedExpressionDataVectorServiceTest.testGetVectorsForSubBioAssays()	This test exercise the ability of the service to retrieve vector for a subset of sub-bioassays.
void	CachedProcessedExpressionDataVectorServiceTest.testGetVectorsForSubset()

Uses of WithMockUser in ubic.gemma.persistence.service.expression.designElement

Methods in ubic.gemma.persistence.service.expression.designElement with annotations of type WithMockUser

Modifier and Type	Method	Description
void	CompositeSequenceDaoTest.testLoad()
void	CompositeSequenceDaoTest.testLoadIds()

Uses of WithMockUser in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment with annotations of type WithMockUser

Modifier and Type	Method	Description
void	ExpressionExperimentDaoTest.testFilterAndCountByArrayDesign()
void	ExpressionExperimentDaoTest.testFilterWithStatementSecondObject()
void	FactorValueDaoTest.testFindByValueStartingWith()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequency()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyAsAnonymous()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyExcludingFreeTextCategories()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyExcludingFreeTextTerms()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyExcludingUncategorizedTerms()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyRetainMentionedTerm()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyWithLargeBatch()
void	ExpressionExperimentDaoTest.testGetAnnotationUsageFrequencyWithUncategorizedCategory()
void	ExpressionExperimentDaoTest.testGetArrayDesignUsageFrequency()
void	ExpressionExperimentDaoTest.testGetCategoriesUsageFrequencyAsAnonymous()
void	ExpressionExperimentDaoTest.testGetCategoriesWithUsageFrequency()
void	ExpressionExperimentDaoTest.testGetOriginalPlatformUsageFrequency()
void	ExpressionExperimentDaoTest.testGetPerTaxonCount()
void	ExpressionExperimentDaoTest.testGetTechnologyTypeUsageFrequency()
void	ExpressionExperimentDaoTest.testLoadValueObjectWithSingleCellData()

Uses of WithMockUser in ubic.gemma.persistence.service.genome

Methods in ubic.gemma.persistence.service.genome with annotations of type WithMockUser

Modifier and Type	Method	Description
void	GeneDaoTest.testGetCompositeSequences()

Uses of WithMockUser in ubic.gemma.persistence.service.maintenance

Methods in ubic.gemma.persistence.service.maintenance with annotations of type WithMockUser

Modifier and Type	Method	Description
void	TableMaintenanceUtilIntegrationTest.test()
void	TableMaintenanceUtilIntegrationTest.testUpdateExpressionExperiment2ArrayDesignEntries()
void	TableMaintenanceUtilIntegrationTest.testUpdateExpressionExperiment2CharacteristicEntries()
void	TableMaintenanceUtilIntegrationTest.testWhenUserIsAgent()

Uses of WithMockUser in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with annotations of type WithMockUser

Modifier and Type	Method	Description
void	ServiceBasedValueObjectConverterTest.testConvertCollection()
void	ServiceBasedValueObjectConverterTest.testConvertCollectionToListSuperType()
void	ServiceBasedValueObjectConverterTest.testConvertCollectionToSuperType()
void	ServiceBasedValueObjectConverterTest.testConvertSingleEntity()
void	ServiceBasedValueObjectConverterTest.testConvertSingleEntityFromSubType()
void	ServiceBasedValueObjectConverterTest.testConvertSingleEntityToSuperType()

Uses of WithMockUser in ubic.gemma.rest

Methods in ubic.gemma.rest with annotations of type WithMockUser

Modifier and Type	Method	Description
void	DatasetsWebServiceTest.testGetDatasetCurationDetails()
void	DatasetsWebServiceTest.testGetDatasetCurationDetailsExposesCurationNoteForAdmin()
void	DatasetsWebServiceTest.testGetDatasetCurationDetailsWithUnknownDatasetIs404()
void	DatasetsWebServiceTest.testGetDatasetGeeq()
void	DatasetsWebServiceTest.testGetDatasetGeeqWhenNotComputedIs404()
void	DatasetsWebServiceTest.testGetDatasetGeeqWithoutEvent()
void	DatasetsWebServiceTest.testGetDatasetGeeqWithUnknownDatasetIs404()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusAdminSeesCurationNote()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusIncludesConvenienceFields()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusMissingValueApplicableForTwoColor()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusNonAdminDoesNotSeeCurationNote()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusPcaFailed()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusPicksLatestEvent()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusPreprocessOk()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusReturnsAllStepsWithNotRunOrNotApplicable()
void	DatasetsWebServiceTest.testGetDatasetPipelineStatusWithUnknownDatasetIs404()
void	TasksWebServiceTest.testGetTaskStatus()
void	TasksWebServiceTest.testGetTaskStatusFallsBackToProgressQueueWhenLastIsEmpty()
void	TasksWebServiceTest.testGetTaskStatusForCompletedTask()
void	TasksWebServiceTest.testGetTaskStatusReportsUnknownWhenStatusIsNull()
void	TasksWebServiceTest.testGetTaskStatusWithUnknownTaskIdIs404()
void	DatasetsWebServiceTest.testRecomputeDatasetGeeqDefaultModeIsAll()
void	DatasetsWebServiceTest.testRecomputeDatasetGeeqIncludesLastComputed()
void	DatasetsWebServiceTest.testRecomputeDatasetGeeqWithSpecificMode()
void	DatasetsWebServiceTest.testRecomputeDatasetGeeqWithUnknownDatasetIs404()
void	DatasetsWebServiceTest.testRedoDatasetDifferentialAnalysis()
void	DatasetsWebServiceTest.testRedoDatasetDifferentialAnalysisWithUnknownAnalysisIs404()
void	DatasetsWebServiceTest.testRefreshDataset()
void	DatasetsWebServiceTest.testRemoveDatasetDifferentialAnalysis()
void	DatasetsWebServiceTest.testRemoveDatasetDifferentialAnalysisWithUnknownAnalysisIs404()
void	DatasetsWebServiceTest.testReplaceDatasetDesignHappyPath()
void	DatasetsWebServiceTest.testReplaceDatasetDesignReturns409WhenForceRequired()
void	DatasetsWebServiceTest.testReplaceDatasetDesignReturnsBadRequestOnBlockers()
void	DatasetsWebServiceTest.testReplaceDatasetDesignWithEmptyBodyIs400()
void	DatasetsWebServiceTest.testReplaceDatasetDesignWithForceAppliesEvenWithCascade()
void	DatasetsWebServiceTest.testReplaceDatasetDesignWithUnknownDatasetIs404()
void	DatasetsWebServiceTest.testRunDatasetBatchInformationFetch()
void	DatasetsWebServiceTest.testRunDatasetDiagnosticsSetsFlag()
void	DatasetsWebServiceTest.testRunDatasetDifferentialAnalysisRejectsSubsetFactorInFactorIds()
void	DatasetsWebServiceTest.testRunDatasetDifferentialAnalysisRejectsUnknownFactorId()
void	DatasetsWebServiceTest.testRunDatasetDifferentialAnalysisWithoutBodyUsesAllNonBatchFactors()
void	DatasetsWebServiceTest.testRunDatasetDifferentialAnalysisWithoutDesignIs400()
void	DatasetsWebServiceTest.testRunDatasetPreprocess()
void	DatasetsWebServiceTest.testRunDatasetPreprocessWithUnknownDatasetIs404()
void	AnnotationsWebServiceTest.testSearchTaxonDatasets()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsAppliesMultipleChanges()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsClearsNeedsAttention()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsClearsTroubled()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsSetsNeedsAttention()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsSetsTroubled()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsSkipsNoOpTroubled()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsUpdatesCurationNote()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsWithEmptyBodyIs400()
void	DatasetsWebServiceTest.testUpdateDatasetCurationDetailsWithUnknownDatasetIs404()
void	DatasetsWebServiceTest.testUpdateDatasetPermissionsMakesPrivate()
void	DatasetsWebServiceTest.testUpdateDatasetPermissionsMakesPublic()
void	DatasetsWebServiceTest.testUpdateDatasetPermissionsReturnsCurrentStateWhenIsPublicOmitted()
void	DatasetsWebServiceTest.testUpdateDatasetPermissionsWithEmptyBodyIs400()
void	DatasetsWebServiceTest.testUpdateDatasetPermissionsWithUnknownDatasetIs404()

Uses of WithMockUser in ubic.gemma.web.controller.common.auditAndSecurity

Methods in ubic.gemma.web.controller.common.auditAndSecurity with annotations of type WithMockUser

Modifier and Type	Method	Description
void	UserFormMultiActionControllerTest.testEditUserUpdateEmail()
void	UserFormMultiActionControllerTest.testEditUserUpdateEmailWhenEmailIsInvalid()
void	UserFormMultiActionControllerTest.testEditUserUpdatePassword()
void	UserFormMultiActionControllerTest.testEditUserUpdatePasswordWhenConfirmationDoesNotMatch()
void	UserFormMultiActionControllerTest.testEditUserUpdatePasswordWhenPasswordIsTooShort()