Uses of Class
ubic.gemma.model.expression.bioAssay.BioAssayValueObject

Packages that use BioAssayValueObject

Package	Description
ubic.gemma.core.visualization
ubic.gemma.model.expression.bioAssay
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.expression.bioAssay
ubic.gemma.web.controller.expression.experiment
ubic.gemma.web.controller.visualization
ubic.gemma.web.taglib.expression.experiment

Uses of BioAssayValueObject in ubic.gemma.core.visualization

Methods in ubic.gemma.core.visualization that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationService.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs)	Put data vectors in the order you'd want to display the experimental design.
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationService.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, ExperimentalFactor primaryFactor)	Put data vectors in the order you'd want to display the experimental design.
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationServiceImpl.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs)
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationServiceImpl.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, ExperimentalFactor primaryFactor)

Uses of BioAssayValueObject in ubic.gemma.model.expression.bioAssay

Methods in ubic.gemma.model.expression.bioAssay that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
static Collection<BioAssayValueObject>	BioAssayValueObject.convert2ValueObjects(Collection<BioAssay> bioAssays)

Uses of BioAssayValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
List<BioAssayValueObject>	BioAssayDimensionValueObject.getBioAssays()
List<BioAssayValueObject>	DataVectorValueObject.getBioAssays()

Method parameters in ubic.gemma.model.expression.bioAssayData with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	BioAssayDimensionValueObject.addBioAssays(List<BioAssayValueObject> bvos)
void	BioAssayDimensionValueObject.reorder(List<BioAssayValueObject> newOrdering)

Uses of BioAssayValueObject in ubic.gemma.persistence.service.expression.bioAssay

Methods in ubic.gemma.persistence.service.expression.bioAssay that return BioAssayValueObject

Modifier and Type	Method	Description
protected BioAssayValueObject	BioAssayDaoImpl.doLoadValueObject(BioAssay entity)

Methods in ubic.gemma.persistence.service.expression.bioAssay that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
List<BioAssayValueObject>	BioAssayDao.loadValueObjects(Collection<BioAssay> entities, Map<Long,ArrayDesignValueObject> arrayDesignValueObjects, boolean basic)
List<BioAssayValueObject>	BioAssayDaoImpl.loadValueObjects(Collection<BioAssay> entities, Map<Long,ArrayDesignValueObject> arrayDesignValueObjects, boolean basic)	Method that allows specification of FactorValueBasicValueObject in the bioMaterialVOs
List<BioAssayValueObject>	BioAssayService.loadValueObjects(Collection<BioAssay> entities, boolean basic)
List<BioAssayValueObject>	BioAssayServiceImpl.loadValueObjects(Collection<BioAssay> entities, boolean basic)

Uses of BioAssayValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
ResponseDataObject<List<BioAssayValueObject>>	DatasetsWebService.getDatasetSamples(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, boolean useProcessedQuantitationType)	Retrieves the samples for the given dataset.

Uses of BioAssayValueObject in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
List<BioAssayValueObject>	DatasetArgService.getSamples(DatasetArg<?> arg)
List<BioAssayValueObject>	DatasetArgService.getSamples(DatasetArg<?> datasetArg, QuantitationType qt)	Obtain a collection of BioAssays that represent the experiments samples for a particular quantitation type.

Uses of BioAssayValueObject in ubic.gemma.web.controller.expression.bioAssay

Methods in ubic.gemma.web.controller.expression.bioAssay that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Collection<BioAssayValueObject>	BioAssayController.getBioAssays(Long eeId)

Uses of BioAssayValueObject in ubic.gemma.web.controller.expression.experiment

Methods in ubic.gemma.web.controller.expression.experiment that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Collection<BioAssayValueObject>	ExpressionExperimentEditValueObject.getBioAssays()

Method parameters in ubic.gemma.web.controller.expression.experiment with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	ExpressionExperimentEditValueObject.setBioAssays(Collection<BioAssayValueObject> bioAssays)

Uses of BioAssayValueObject in ubic.gemma.web.controller.visualization

Method parameters in ubic.gemma.web.controller.visualization with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	VisualizationValueObject.setUpFactorProfiles(LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>> layout)	Initialize the factor profiles.

Constructor parameters in ubic.gemma.web.controller.visualization with type arguments of type BioAssayValueObject

Constructor	Description
FactorProfile(ExperimentalFactor ef, LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>> layouts)

Uses of BioAssayValueObject in ubic.gemma.web.taglib.expression.experiment

Method parameters in ubic.gemma.web.taglib.expression.experiment with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	AssayViewTag.setBioAssays(Collection<BioAssayValueObject> bioAssays)