Uses of Class
ubic.gemma.model.expression.experiment.ExperimentalFactorValueObject

Packages that use ExperimentalFactorValueObject

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.rest

Uses of ExperimentalFactorValueObject in ubic.gemma.core.analysis.expression.diff

Methods in ubic.gemma.core.analysis.expression.diff that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	GeneDifferentialExpressionService.configExperimentalFactorValueObject(ExperimentalFactor ef)
ExperimentalFactorValueObject	GeneDifferentialExpressionServiceImpl.configExperimentalFactorValueObject(ExperimentalFactor ef)

Uses of ExperimentalFactorValueObject in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	DifferentialExpressionAnalysisValueObject.getSubsetFactor()

Methods in ubic.gemma.model.analysis.expression.diff that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
Collection<ExperimentalFactorValueObject>	DifferentialExpressionAnalysisResultSetValueObject.getExperimentalFactors()
Collection<ExperimentalFactorValueObject>	DifferentialExpressionValueObject.getExperimentalFactors()
Collection<ExperimentalFactorValueObject>	DiffExResultSetSummaryValueObject.getExperimentalFactors()

Methods in ubic.gemma.model.analysis.expression.diff with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisValueObject.setSubsetFactor(ExperimentalFactorValueObject subsetFactor)

Method parameters in ubic.gemma.model.analysis.expression.diff with type arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisResultSetValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)
void	DifferentialExpressionValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)
void	DiffExResultSetSummaryValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)

Uses of ExperimentalFactorValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
static boolean	ExperimentFactorUtils.isBatchFactor(ExperimentalFactorValueObject ef)	Check if a given factor VO is a batch factor.

Uses of ExperimentalFactorValueObject in ubic.gemma.persistence.service.expression.experiment

Subclasses with type arguments of type ExperimentalFactorValueObject in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Class	Description
class	ExperimentalFactorDaoImpl
class	ExperimentalFactorServiceImpl

Subinterfaces with type arguments of type ExperimentalFactorValueObject in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Interface	Description
interface	ExperimentalFactorDao
interface	ExperimentalFactorService

Methods in ubic.gemma.persistence.service.expression.experiment that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
protected ExperimentalFactorValueObject	ExperimentalFactorDaoImpl.doLoadValueObject(ExperimentalFactor e)

Uses of ExperimentalFactorValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	DatasetsWebService.BatchConfoundValueObject.getFactor()
ExperimentalFactorValueObject	HeatmapDataValueObject.FactorEntry.getFactor()	Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.

Methods in ubic.gemma.rest that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
List<ExperimentalFactorValueObject>	DatasetsWebService.ExpressionExperimentSubSetGroupValueObject.getFactors()	List of factors that are associated with the subsets in this group.

Methods in ubic.gemma.rest with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	HeatmapDataValueObject.FactorEntry.setFactor(ExperimentalFactorValueObject factor)	Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.

Constructors in ubic.gemma.rest with parameters of type ExperimentalFactorValueObject

Modifier	Constructor	Description
	FactorEntry(ExperimentalFactorValueObject factor, LinkedHashMap<Long,Double> measurements)