Uses of Class
ubic.gemma.model.expression.experiment.ExperimentalFactorValueObject

Packages that use ExperimentalFactorValueObject

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.rest
ubic.gemma.web.controller.analysis.expression.diff
ubic.gemma.web.controller.expression.experiment

Uses of ExperimentalFactorValueObject in ubic.gemma.core.analysis.expression.diff

Methods in ubic.gemma.core.analysis.expression.diff that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	GeneDifferentialExpressionService.configExperimentalFactorValueObject(ExperimentalFactor ef)
ExperimentalFactorValueObject	GeneDifferentialExpressionServiceImpl.configExperimentalFactorValueObject(ExperimentalFactor ef)

Uses of ExperimentalFactorValueObject in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	DifferentialExpressionAnalysisValueObject.getSubsetFactor()

Methods in ubic.gemma.model.analysis.expression.diff that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
Collection<ExperimentalFactorValueObject>	DifferentialExpressionAnalysisResultSetValueObject.getExperimentalFactors()
Collection<ExperimentalFactorValueObject>	DifferentialExpressionValueObject.getExperimentalFactors()
Collection<ExperimentalFactorValueObject>	DiffExResultSetSummaryValueObject.getExperimentalFactors()

Methods in ubic.gemma.model.analysis.expression.diff with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisValueObject.setSubsetFactor(ExperimentalFactorValueObject subsetFactor)

Method parameters in ubic.gemma.model.analysis.expression.diff with type arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisResultSetValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)
void	DifferentialExpressionValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)
void	DiffExResultSetSummaryValueObject.setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)

Uses of ExperimentalFactorValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
static boolean	ExperimentFactorUtils.isBatchFactor(ExperimentalFactorValueObject ef)	Check if a given factor VO is a batch factor.

Uses of ExperimentalFactorValueObject in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
protected ExperimentalFactorValueObject	ExperimentalFactorDaoImpl.doLoadValueObject(ExperimentalFactor e)

Uses of ExperimentalFactorValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return ExperimentalFactorValueObject

Modifier and Type	Method	Description
ExperimentalFactorValueObject	DatasetsWebService.BatchConfoundValueObject.getFactor()

Methods in ubic.gemma.rest that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
List<ExperimentalFactorValueObject>	DatasetsWebService.ExpressionExperimentSubSetGroupValueObject.getFactors()	List of factors that are associated with the subsets in this group.

Uses of ExperimentalFactorValueObject in ubic.gemma.web.controller.analysis.expression.diff

Methods in ubic.gemma.web.controller.analysis.expression.diff that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
Collection<ExperimentalFactorValueObject>	DifferentialExpressionAnalyzerInfo.getFactors()

Method parameters in ubic.gemma.web.controller.analysis.expression.diff with type arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalyzerInfo.setFactors(Collection<ExperimentalFactorValueObject> factors)

Uses of ExperimentalFactorValueObject in ubic.gemma.web.controller.expression.experiment

Subclasses of ExperimentalFactorValueObject in ubic.gemma.web.controller.expression.experiment

Modifier and Type	Class	Description
class	ExperimentalFactorValueWebUIObject

Methods in ubic.gemma.web.controller.expression.experiment that return types with arguments of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
Collection<ExperimentalFactorValueObject>	ExperimentalDesignController.getExperimentalFactors(EntityDelegator<?> e)	AJAX
Collection<ExperimentalFactorValueObject>	ExpressionExperimentController.getExperimentalFactors(EntityDelegator<ExpressionExperiment> e)	AJAX
Collection<ExperimentalFactorValueObject>	ExpressionExperimentExperimentalFactorValueObject.getExperimentalFactors()

Methods in ubic.gemma.web.controller.expression.experiment with parameters of type ExperimentalFactorValueObject

Modifier and Type	Method	Description
void	ExperimentalDesignController.updateExperimentalFactors(ExperimentalFactorValueObject[] efvos)	AJAX