Uses of Class
ubic.gemma.model.expression.bioAssayData.DesignElementDataVector

Packages that use DesignElementDataVector

Package	Description
ubic.gemma.core.analysis.preprocess
ubic.gemma.core.analysis.service
ubic.gemma.core.datastructure.matrix
ubic.gemma.model.common.quantitationtype
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.util
ubic.gemma.rest.util.args

Uses of DesignElementDataVector in ubic.gemma.core.analysis.preprocess

Method parameters in ubic.gemma.core.analysis.preprocess with type arguments of type DesignElementDataVector

Modifier and Type	Method	Description
static ExpressionDataMatrix<?>	ExpressionDataMatrixBuilder.getMatrix(Collection<? extends DesignElementDataVector> vectors)	Create a matrix using all the vectors, which are assumed to all be of the same quantitation type.

Constructor parameters in ubic.gemma.core.analysis.preprocess with type arguments of type DesignElementDataVector

Constructor	Description
ExpressionDataMatrixBuilder(Collection<? extends DesignElementDataVector> vectors)

Uses of DesignElementDataVector in ubic.gemma.core.analysis.service

Methods in ubic.gemma.core.analysis.service with parameters of type DesignElementDataVector

Modifier and Type	Method	Description
protected void	ExpressionExperimentVectorManipulatingService.convertFromBytes(List<Object> data, PrimitiveType representation, DesignElementDataVector oldV)

Uses of DesignElementDataVector in ubic.gemma.core.datastructure.matrix

Method parameters in ubic.gemma.core.datastructure.matrix with type arguments of type DesignElementDataVector

Modifier and Type	Method	Description
protected abstract void	BaseExpressionDataMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)
protected void	EmptyExpressionMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)
protected void	ExpressionDataBooleanMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)
protected void	ExpressionDataDoubleMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)	Convert DesignElementDataVectors into Double matrix.
protected void	ExpressionDataIntegerMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)
protected void	ExpressionDataStringMatrix.vectorsToMatrix(Collection<? extends DesignElementDataVector> vectors)

Constructor parameters in ubic.gemma.core.datastructure.matrix with type arguments of type DesignElementDataVector

Constructor	Description
ExpressionDataBooleanMatrix(Collection<? extends DesignElementDataVector> vectors)
ExpressionDataBooleanMatrix(Collection<? extends DesignElementDataVector> vectors, List<QuantitationType> qtypes)
ExpressionDataDoubleMatrix(Collection<? extends DesignElementDataVector> vectors)
ExpressionDataDoubleMatrix(Collection<? extends DesignElementDataVector> dataVectors, Collection<QuantitationType> quantitationTypes)
ExpressionDataDoubleMatrix(Collection<? extends DesignElementDataVector> dataVectors, QuantitationType quantitationType)
ExpressionDataIntegerMatrix(Collection<? extends DesignElementDataVector> vectors)
ExpressionDataStringMatrix(Collection<? extends DesignElementDataVector> vectors)
ExpressionDataStringMatrix(Collection<? extends DesignElementDataVector> dataVectors, QuantitationType quantitationType)

Uses of DesignElementDataVector in ubic.gemma.model.common.quantitationtype

Constructor parameters in ubic.gemma.model.common.quantitationtype with type arguments of type DesignElementDataVector

Constructor	Description
QuantitationTypeValueObject(QuantitationType qt, ExpressionExperiment expressionExperiment, Class<? extends DesignElementDataVector> vectorType)	Create a QuantitationType VO in the context of an associated experiment.

Uses of DesignElementDataVector in ubic.gemma.model.expression.bioAssayData

Subclasses of DesignElementDataVector in ubic.gemma.model.expression.bioAssayData

Modifier and Type	Class	Description
class	ProcessedExpressionDataVector	Represents the processed data that is used for actual analyses.
class	RawExpressionDataVector	Data for one design element, across one or more bioassays, for a single quantitation type.

Constructors in ubic.gemma.model.expression.bioAssayData with parameters of type DesignElementDataVector

Constructor	Description
BooleanVectorValueObject(DesignElementDataVector dedv, BioAssayDimensionValueObject badvo)
DataVectorValueObject(DesignElementDataVector dedv, Collection<Long> genes, BioAssayDimensionValueObject badvo)
DataVectorValueObject(DesignElementDataVector dedv, BioAssayDimensionValueObject badvo)
DoubleVectorValueObject(DesignElementDataVector dedv, Collection<Long> genes, BioAssayDimensionValueObject badVo)
DoubleVectorValueObject(DesignElementDataVector dedv, BioAssayDimensionValueObject badVo)
DoubleVectorValueObject(DesignElementDataVector dedv, BioAssayDimensionValueObject vectorsBadVo, Collection<Long> genes, BioAssayDimension dimToMatch)	Create a vector where we expect to have to create one or more gaps to match other vectors, defined by dimToMatch.

Uses of DesignElementDataVector in ubic.gemma.persistence.service.expression.bioAssayData

Classes in ubic.gemma.persistence.service.expression.bioAssayData with type parameters of type DesignElementDataVector

Modifier and Type	Class	Description
class	AbstractDesignElementDataVectorDao<T extends DesignElementDataVector>
class	AbstractDesignElementDataVectorService<T extends DesignElementDataVector>
interface	DesignElementDataVectorDao<T extends DesignElementDataVector>

Methods in ubic.gemma.persistence.service.expression.bioAssayData that return DesignElementDataVector

Modifier and Type	Method	Description
DesignElementDataVector	RawAndProcessedExpressionDataVectorDaoImpl.find(DesignElementDataVector entity)
DesignElementDataVector	RawAndProcessedExpressionDataVectorDaoImpl.load(Long id)

Methods in ubic.gemma.persistence.service.expression.bioAssayData that return types with arguments of type DesignElementDataVector

Modifier and Type	Method	Description
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorServiceImpl.findAndThaw(Collection<QuantitationType> quantitationTypes)
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorServiceImpl.findAndThaw(BioAssayDimension bioAssayDimension)
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorDaoImpl.load(Collection<Long> ids)
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorService.thaw(Collection<DesignElementDataVector> vectors)	Thaw both raw and processed vectors.
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorServiceImpl.thaw(Collection<DesignElementDataVector> vectors)	Deprecated.

Methods in ubic.gemma.persistence.service.expression.bioAssayData with parameters of type DesignElementDataVector

Modifier and Type	Method	Description
DesignElementDataVector	RawAndProcessedExpressionDataVectorDaoImpl.find(DesignElementDataVector entity)

Method parameters in ubic.gemma.persistence.service.expression.bioAssayData with type arguments of type DesignElementDataVector

Modifier and Type	Method	Description
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorService.thaw(Collection<DesignElementDataVector> vectors)	Thaw both raw and processed vectors.
Collection<DesignElementDataVector>	RawAndProcessedExpressionDataVectorServiceImpl.thaw(Collection<DesignElementDataVector> vectors)	Deprecated.

Uses of DesignElementDataVector in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type DesignElementDataVector

Modifier and Type	Method	Description
static void	BusinessKey.checkKey(DesignElementDataVector designElementDataVector)

Uses of DesignElementDataVector in ubic.gemma.rest.util.args

Method parameters in ubic.gemma.rest.util.args with type arguments of type DesignElementDataVector

Modifier and Type	Method	Description
QuantitationType	QuantitationTypeArgService.getEntity(QuantitationTypeArg<?> quantitationTypeArg, ExpressionExperiment ee, Class<? extends DesignElementDataVector> vectorType)