Uses of Package
ubic.gemma.model.expression.designElement

Packages that use ubic.gemma.model.expression.designElement

Package	Description
ubic.gemma.core.analysis.expression.coexpression.links
ubic.gemma.core.analysis.expression.diff
ubic.gemma.core.analysis.preprocess.svd
ubic.gemma.core.analysis.sequence
ubic.gemma.core.analysis.service
ubic.gemma.core.datastructure.matrix	This package contains data structures for representing matrices of gene expression.
ubic.gemma.core.datastructure.matrix.io	This package contains I/O utilities for reading and writing expression data matrices.
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.core.loader.expression.singleCell	This package contains classes for loading single-cell expression data.
ubic.gemma.core.loader.expression.ucsc.cellbrowser	This package contains utilities for loading and interacting with the UCSC Cell Browser.
ubic.gemma.core.loader.util.mapper	Utilities for mapping Identifiable entities to external identifiers.
ubic.gemma.core.search
ubic.gemma.core.search.source
ubic.gemma.core.visualization
ubic.gemma.core.visualization.cellbrowser	This package contains classes related to the Cell Browser visualization tool.
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.analysis.expression.pca
ubic.gemma.model.analysis.sequence
ubic.gemma.model.expression.arrayDesign
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.designElement
ubic.gemma.persistence.persister
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.expression.designElement
ubic.gemma.web.controller.expression.experiment
ubic.gemma.web.controller.visualization

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.analysis.expression.coexpression.links

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.analysis.expression.diff

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.analysis.preprocess.svd

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.analysis.sequence

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.analysis.service

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.datastructure.matrix

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.datastructure.matrix.io

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.loader.expression.arrayDesign

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.loader.expression.cellxgene

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.loader.expression.singleCell

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.loader.expression.ucsc.cellbrowser

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.loader.util.mapper

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.search

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.search.source

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.visualization

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.core.visualization.cellbrowser

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.analysis.expression.diff

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.analysis.expression.pca

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.analysis.sequence

Class	Description
CompositeSequenceValueObject

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.expression.arrayDesign

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.expression.bioAssayData

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).
CompositeSequenceValueObject

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.model.expression.designElement

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.persister

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.analysis.expression.pca

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.expression.arrayDesign

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.expression.bioAssayData

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.expression.designElement

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).
CompositeSequenceValueObject

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.expression.experiment

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.genome

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.genome.biosequence

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.service.genome.gene

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.persistence.util

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.rest

Class	Description
CompositeSequenceValueObject

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.rest.util.args

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).
CompositeSequenceValueObject

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.web.controller.expression.designElement

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.web.controller.expression.experiment

Class	Description
CompositeSequence	A "Probe set" (Affymetrix) or a "Probe" (other types of arrays).

Classes in ubic.gemma.model.expression.designElement used by ubic.gemma.web.controller.visualization

Class	Description
CompositeSequenceValueObject