Uses of Class
ubic.gemma.model.expression.experiment.ExperimentalDesign

Packages that use ExperimentalDesign

Package	Description
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.web.controller.expression.experiment

Uses of ExperimentalDesign in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff with parameters of type ExperimentalDesign

Modifier and Type	Method	Description
static DifferentialExpressionAnalysis	RandomDifferentialExpressionAnalysisUtils.randomAnalysis(BioAssaySet experimentAnalyzed, ExperimentalDesign design, ArrayDesign platform)

Uses of ExperimentalDesign in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return ExperimentalDesign

Modifier and Type	Method	Description
ExperimentalDesign	ExperimentalFactor.getExperimentalDesign()
ExperimentalDesign	ExpressionExperiment.getExperimentalDesign()
static ExperimentalDesign	ExperimentalDesign.Factory.newInstance()

Methods in ubic.gemma.model.expression.experiment with parameters of type ExperimentalDesign

Modifier and Type	Method	Description
static Map<ExperimentalFactor,Map<BioMaterial,FactorValue>>	ExperimentalDesignUtils.getFactorValueMap(ExperimentalDesign experimentalDesign, Collection<BioMaterial> samples)	Create a mapping of samples to factor values for all factors in the experimental design.
static ExperimentalFactor	ExperimentalFactor.Factory.newInstance(ExperimentalDesign ed, String name, FactorType factorType)
void	ExperimentalFactor.setExperimentalDesign(ExperimentalDesign experimentalDesign)
void	ExpressionExperiment.setExperimentalDesign(ExperimentalDesign experimentalDesign)

Uses of ExperimentalDesign in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return ExperimentalDesign

Modifier and Type	Method	Description
ExperimentalDesign	ExperimentalDesignDaoImpl.find(ExperimentalDesign experimentalDesign)
ExperimentalDesign	ExperimentalDesignDao.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)	Pick a random experimental design that needs attention.
ExperimentalDesign	ExperimentalDesignDaoImpl.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)
ExperimentalDesign	ExperimentalDesignService.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)	Obtain a random experimental design that needs attention.
ExperimentalDesign	ExperimentalDesignServiceImpl.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)
ExperimentalDesign	ExperimentalDesignService.loadWithExperimentalFactors(Long id)
ExperimentalDesign	ExperimentalDesignServiceImpl.loadWithExperimentalFactors(Long id)

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type ExperimentalDesign

Modifier and Type	Method	Description
ExperimentalDesign	ExperimentalDesignDaoImpl.find(ExperimentalDesign experimentalDesign)
ExpressionExperiment	ExpressionExperimentDao.findByDesign(ExperimentalDesign ed)
ExpressionExperiment	ExpressionExperimentDaoImpl.findByDesign(ExperimentalDesign ed)
ExpressionExperiment	ExpressionExperimentService.findByDesign(ExperimentalDesign ed)
ExpressionExperiment	ExpressionExperimentServiceImpl.findByDesign(ExperimentalDesign ed)
ExperimentalDesign	ExperimentalDesignDao.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)	Pick a random experimental design that needs attention.
ExperimentalDesign	ExperimentalDesignDaoImpl.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)
ExperimentalDesign	ExperimentalDesignService.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)	Obtain a random experimental design that needs attention.
ExperimentalDesign	ExperimentalDesignServiceImpl.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)

Uses of ExperimentalDesign in ubic.gemma.web.controller.expression.experiment

Method parameters in ubic.gemma.web.controller.expression.experiment with type arguments of type ExperimentalDesign

Modifier and Type	Method	Description
void	ExperimentalDesignController.createExperimentalFactor(EntityDelegator<ExperimentalDesign> e, ExperimentalFactorValueWebUIObject efvo)	Create an experimental factor.
void	ExperimentalDesignController.deleteExperimentalFactors(EntityDelegator<ExperimentalDesign> e, Long[] efIds)	AJAX