Uses of Package
ubic.gemma.model.genome
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Classes in ubic.gemma.model.genome used by ubic.gemma.core.analysis.expression.coexpression.links Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.analysis.expression.diff Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.analysis.report Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.analysis.sequence Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.analysis.service Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.association.phenotype Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.datastructure.matrix Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.goldenpath Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.image.aba Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.association Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.expression.arrayDesign Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.expression.geo Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.expression.simple.model Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.genome Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.genome.gene.ncbi Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.genome.gene.ncbi.homology Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.genome.taxon Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.loader.util.biomart Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.ontology Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.ontology.providers Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).GeneOntologyTermValueObject Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.search Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.core.search.source Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.analysis.expression Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.analysis.expression.coexpression Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.analysis.expression.diff Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.association Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.association.coexpression Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.association.phenotype Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.common.search Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.expression.arrayDesign Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.expression.bioAssayData Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.expression.biomaterial Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.expression.experiment Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.genome Class Description Chromosome Immutable representation of a chromosomeChromosomeFeature Some part of a chromosomeChromosomeLocation Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation Taxon TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.genome.biosequence Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.genome.gene Class Description ChromosomeFeature Some part of a chromosomeGene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation Taxon TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.genome.gene.phenotype.valueObject Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.model.genome.sequenceAnalysis Class Description Chromosome Immutable representation of a chromosomePhysicalLocation TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.persister Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.analysis Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.analysis.expression.coexpression Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.analysis.expression.diff Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.association Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.association.coexpression Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.association.phenotype Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.association.phenotype.service Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.common.description Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.expression.arrayDesign Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.expression.bioAssayData Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.expression.designElement Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.expression.experiment Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.genome Class Description Chromosome Immutable representation of a chromosomeGene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.genome.biosequence Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.genome.gene Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation PhysicalLocationValueObject A very simple value object to represent a physical locationTaxon TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.genome.sequenceAnalysis Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.service.genome.taxon Class Description Taxon TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.persistence.util Class Description Chromosome Immutable representation of a chromosomeGene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).PhysicalLocation Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.rest Class Description GeneOntologyTermValueObject PhysicalLocationValueObject A very simple value object to represent a physical locationTaxon TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.rest.util.args Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).GeneOntologyTermValueObject PhysicalLocationValueObject A very simple value object to represent a physical locationTaxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.web.controller.expression.arrayDesign Class Description Taxon -
Classes in ubic.gemma.model.genome used by ubic.gemma.web.controller.genome.gene Class Description TaxonValueObject -
Classes in ubic.gemma.model.genome used by ubic.gemma.web.util Class Description Gene Represents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl).