Uses of Interface
ubic.gemma.model.common.Describable
Packages that use Describable
Package
Description
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Uses of Describable in ubic.gemma.core.loader.expression.arrayDesign
Classes in ubic.gemma.core.loader.expression.arrayDesign that implement DescribableModifier and TypeClassDescriptionclassA "probe" (Affymetrix); for other types of arrays, there is no practical distinction between compositesequences and reporters, and all analysis would take place at the level of CompositeSequences. -
Uses of Describable in ubic.gemma.model.analysis
Classes in ubic.gemma.model.analysis that implement DescribableModifier and TypeClassDescriptionclassAn analysis of one or more Investigations.classAn abstract concept of a scientific studyclassSingleExperimentAnalysis<T extends BioAssaySet>An analysis of a single experiment or subset. -
Uses of Describable in ubic.gemma.model.analysis.expression
Classes in ubic.gemma.model.analysis.expression that implement DescribableModifier and TypeClassDescriptionclassAn analysis of one or more ExpressionExperimentsclassA grouping of expression studies. -
Uses of Describable in ubic.gemma.model.analysis.expression.coexpression
Classes in ubic.gemma.model.analysis.expression.coexpression that implement DescribableModifier and TypeClassDescriptionclassA coexpression analysis of one experiment.classThe 'analysis' in the name is a bit of a stretch here, as this object servers purely as an aggregator of all the sample coexpression matrices. -
Uses of Describable in ubic.gemma.model.analysis.expression.diff
Classes in ubic.gemma.model.analysis.expression.diff that implement DescribableModifier and TypeClassDescriptionclassAn analysis of changes in expression levels across experimental conditionsclassRepresents an analysis that combines the results of other analyses of differential expression. -
Uses of Describable in ubic.gemma.model.analysis.expression.pca
Classes in ubic.gemma.model.analysis.expression.pca that implement Describable -
Uses of Describable in ubic.gemma.model.blacklist
Classes in ubic.gemma.model.blacklist that implement DescribableModifier and TypeClassDescriptionclassRepresents a blacklisted entity that should not be loaded into Gemma.classTODO Document Meclass -
Uses of Describable in ubic.gemma.model.common
Classes in ubic.gemma.model.common that implement Describable -
Uses of Describable in ubic.gemma.model.common.auditAndSecurity
Classes in ubic.gemma.model.common.auditAndSecurity that implement DescribableModifier and TypeClassDescriptionclassAn entity which can have an audit trail attached to it.classRepresenting a person or organization that can be contacted about, or is the source of, data in the system.classDeprecated.not neededclassA user of the software system, who is authenticated.classAn organized group of researchers with an identifiable leader and group members. -
Uses of Describable in ubic.gemma.model.common.description
Classes in ubic.gemma.model.common.description that implement DescribableModifier and TypeClassDescriptionclassclassInstances of this are used to describe other entities.class -
Uses of Describable in ubic.gemma.model.common.protocol
Classes in ubic.gemma.model.common.protocol that implement Describable -
Uses of Describable in ubic.gemma.model.common.quantitationtype
Classes in ubic.gemma.model.common.quantitationtype that implement Describable -
Uses of Describable in ubic.gemma.model.expression.arrayDesign
Classes in ubic.gemma.model.expression.arrayDesign that implement DescribableModifier and TypeClassDescriptionclassRepresents an assembly of design elements that are assayed all at once. -
Uses of Describable in ubic.gemma.model.expression.bioAssay
Classes in ubic.gemma.model.expression.bioAssay that implement DescribableModifier and TypeClassDescriptionclassRepresents the bringing together of a biomaterial with an assay of some sort (typically an expression assay). -
Uses of Describable in ubic.gemma.model.expression.bioAssayData
Subinterfaces of Describable in ubic.gemma.model.expression.bioAssayDataModifier and TypeInterfaceDescriptioninterfaceCharacteristics applicable to individual cells in aSingleCellDimension.Classes in ubic.gemma.model.expression.bioAssayData that implement DescribableModifier and TypeClassDescriptionclassRepresents a cell type assignment where cells from a given dataset are assigned cell types.classGeneric cell-level characteristics. -
Uses of Describable in ubic.gemma.model.expression.biomaterial
Classes in ubic.gemma.model.expression.biomaterial that implement DescribableModifier and TypeClassDescriptionclassIn MAGE, BioMaterial is an abstract class that represents the important substances such as cells, tissues, DNA, proteins, etc...classclass -
Uses of Describable in ubic.gemma.model.expression.designElement
Classes in ubic.gemma.model.expression.designElement that implement DescribableModifier and TypeClassDescriptionclassA "Probe set" (Affymetrix) or a "Probe" (other types of arrays). -
Uses of Describable in ubic.gemma.model.expression.experiment
Subinterfaces of Describable in ubic.gemma.model.expression.experimentClasses in ubic.gemma.model.expression.experiment that implement DescribableModifier and TypeClassDescriptionclassRepresents a set ofBioAssays.classclassExperimentFactors are the dependent variables of an experiment (e.g., genotype, time, glucose concentration).classclassclassA subset of samples from an ExpressionExperimentclassclassclassA special kind of characteristic that act as a statement. -
Uses of Describable in ubic.gemma.model.genome
Classes in ubic.gemma.model.genome that implement DescribableModifier and TypeClassDescriptionclassSome part of a chromosomeclassRepresents a functionally transcribed unit in the genome, recognized by other databases (NCBI, Ensembl). -
Uses of Describable in ubic.gemma.model.genome.biosequence
Classes in ubic.gemma.model.genome.biosequence that implement DescribableModifier and TypeClassDescriptionclassThe sequence of a biological polymer such as a protein or DNA. -
Uses of Describable in ubic.gemma.model.genome.gene
Classes in ubic.gemma.model.genome.gene that implement DescribableModifier and TypeClassDescriptionclassclassA grouping of genes that share a common relationship -
Uses of Describable in ubic.gemma.persistence.util
Methods in ubic.gemma.persistence.util with parameters of type DescribableModifier and TypeMethodDescriptionintDescribableComparator.compare(Describable d1, Describable d2) -
Uses of Describable in ubic.gemma.rest
Classes in ubic.gemma.rest that implement DescribableModifier and TypeClassDescriptionstatic classstatic classstatic final class -
Uses of Describable in ubic.gemma.web.controller.expression.experiment
Classes in ubic.gemma.web.controller.expression.experiment that implement Describable